January 2020 Archives by author

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Starting: Wed Jan 1 18:09:34 CET 2020
Ending: Fri Jan 31 20:23:45 CET 2020
Messages: 404

[gmx-users] inter-chain disulfide bridges HERNANDEZ ALBA Oscar (IPHC)
[gmx-users] compressibility values in coarse grained simulations Deepanshi .
[gmx-users] compressibility values in coarse grained simulations Deepanshi .
[gmx-users] gmx covar error in gromacs2019.x 008
[gmx-users] The maxwarn fatal errors Mark Abraham
[gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests Mark Abraham
[gmx-users] Error: Cannot find AVX 512F compiler flag Mark Abraham
[gmx-users] Error: Cannot find AVX 512F compiler flag Mark Abraham
[gmx-users] T-REMD stalled - no trr files generated Mark Abraham
[gmx-users] Error: Cannot find AVX 512F compiler flag Shlomit Afgin
[gmx-users] Error: Cannot find AVX 512F compiler flag Shlomit Afgin
[gmx-users] Error: Cannot find AVX 512F compiler flag Shlomit Afgin
[gmx-users] Error: Cannot find AVX 512F compiler flag Shlomit Afgin
[gmx-users] Dipole moment and dielectric constant - gmx dipoles Iman Ahmadabadi
[gmx-users] Dipole moment and dielectric constant - gmx dipoles Iman Ahmadabadi
[gmx-users] gmx genconf Alex
[gmx-users] ERROR DURING INSTALLATION Sakshi Arora
[gmx-users] Loading topology into vmd Miro Astore
[gmx-users] Loading topology into vmd Miro Astore
[gmx-users] Loading topology into vmd Miro Astore
[gmx-users] top2psf license Miro Astore
[gmx-users] top2psf license Miro Astore
[gmx-users] learning gromacs Miro Astore
[gmx-users] trjcat and trjconv performance Miro Astore
[gmx-users] constant x-y plane area for membrane simulations. Miro Astore
[gmx-users] Charmm to Gromacs itps Miro Astore
[gmx-users] Vibrational spectra of amide I using gromacs Mijiddorj B
[gmx-users] gromacs.org_gmx-users Digest, Vol 189, Issue 18 Mijiddorj B
[gmx-users] Vibrational spectra of amide I using gromacs Mijiddorj B
[gmx-users] Vibrational spectra of amide I using gromacs Mijiddorj B
[gmx-users] Extending simulation Naveen BK
[gmx-users] Can I use gromacs order to compute tetrahedral order parameter of water? Subhadip Basu
[gmx-users] Bilayer exploding with semiisotropic coupling Paul Bauer
[gmx-users] High energies after alignment of trajectory Hannah Magdalena Baumann
[gmx-users] DNA-Protein complex Rakesh Bhowmick
[gmx-users] Make index command in gromacs Christian Blau
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Christian Blau
[gmx-users] How to rotate the molecule in box Christian Blau
[gmx-users] cant compute msd Christian Blau
[gmx-users] Replica exchange probabilities and extend simulation Christian Blau
[gmx-users] Visualize replica exchange Christian Blau
[gmx-users] gmx genconf Christian Blau
[gmx-users] State of Matter Christian Blau
[gmx-users] specific heat calculation using "gmx dos" Christian Blau
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Christian Blau
[gmx-users] Gromacs 2019 - Ryzen Architecture Kevin Boyd
[gmx-users] Bilayer exploding with semiisotropic coupling Kevin Boyd
[gmx-users] Available Post-doc position Jan Brezovsky
[gmx-users] T-REMD stalled - no trr files generated Daniel Burns
[gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers Cardenas, Alfredo E
[gmx-users] cant compute msd Devargya Chakraborty
[gmx-users] cant compute msd Devargya Chakraborty
[gmx-users] query regarding center of mass removal Snehasis Chatterjee
[gmx-users] query regarding center of mass removal Snehasis Chatterjee
[gmx-users] learning gromacs Somdatta Chaudhari
[gmx-users] Bilayer exploding with semiisotropic coupling Namit Chaudhary
[gmx-users] Bilayer exploding with semiisotropic coupling Namit Chaudhary
[gmx-users] Bilayer exploding with semiisotropic coupling Namit Chaudhary
[gmx-users] is GPU peer access(RDMA) supported with inter-node and gmx2020 mpi version? Jimmy Chen
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? ZHANG Cheng
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? ZHANG Cheng
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? ZHANG Cheng
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? ZHANG Cheng
[gmx-users] Assertion failed for the REMD tutorial ZHANG Cheng
[gmx-users] Assertion failed for the REMD tutorial ZHANG Cheng
[gmx-users] How to set the temperatures for REMD? ZHANG Cheng
[gmx-users] How to run REMD for EM, NVT, NPT and production run? ZHANG Cheng
[gmx-users] Native contacts similar to "gmx mindist" ZHANG Cheng
[gmx-users] solute tempering (REST2) Nicolas Cheron
[gmx-users] solute tempering (REST2) Nicolas Cheron
[gmx-users] Analysis with .sh file Riccardo Concu
[gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests João M. Damas
[gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests João M. Damas
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Bhupendra Dandekar
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Bhupendra Dandekar
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Bhupendra Dandekar
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Bhupendra Dandekar
[gmx-users] Comparing the RMSD of an in silico variant to a crystal structure. Bratin Kumar Das
[gmx-users] atom moved too far Christos Deligkaris
[gmx-users] atom moved too far Christos Deligkaris
[gmx-users] atom moved too far Christos Deligkaris
[gmx-users] com motion and position restraints may cause artifacts Christos Deligkaris
[gmx-users] com motion and position restraints may cause artifacts Christos Deligkaris
[gmx-users] CMAP format on GROMCACS Marcelo Depólo
[gmx-users] CMAP format on GROMACS Marcelo Depólo
[gmx-users] cmaptypes format Marcelo Depólo
[gmx-users] Residue-Specific CMAPS in GROMACS Marcelo Depólo
[gmx-users] Problem while running equilibration Nirali Desai
[gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers Lyudmyla Dorosh
[gmx-users] Cell Membrane Potential Du, Yu
[gmx-users] What is the "gen-vel" used for? Neena Susan Eappen
[gmx-users] amide-capped C-terminus; OPLS force field Neena Susan Eappen
[gmx-users] Simulated Annealing command line Neena Susan Eappen
[gmx-users] Simulated Annealing command line Neena Susan Eappen
[gmx-users] Simulated Annealing command line Neena Susan Eappen
[gmx-users] Comparing the RMSD of an in silico variant to a crystal structure. Matthew Fisher
[gmx-users] Making an index file for specific solvent molecules Aharon Gomez
[gmx-users] GROMOS forcefields Kenny Goossens
[gmx-users] Simulated Annealing command line Kenny Goossens
[gmx-users] Loading topology into vmd Kenny Goossens
[gmx-users] domain decomposition failure Harry Mark Greenblatt
[gmx-users] Extending simulation Shradheya R.R. Gupta
[gmx-users] Extending simulation Shradheya R.R. Gupta
[gmx-users] system has non zero net charge Gudrun Gygli
[gmx-users] Position restrains calculation of virial Johannes Hermann
[gmx-users] com motion and position restraints may cause artifacts Berk Hess
[gmx-users] .dat file from gmx densmap does not match prescribed size Berk Hess
[gmx-users] .dat file from gmx densmap does not match prescribed size Berk Hess
[gmx-users] Error: Cannot find AVX 512F compiler flag Tru Huynh
[gmx-users] question regarding gmx helix orientation SHAHEE ISLAM
[gmx-users] Ran into trouble installing Gromacs API Eric Irrgang
[gmx-users] Make index command in gromacs Shan Jayasinghe
[gmx-users] Make index command in gromacs Shan Jayasinghe
[gmx-users] Extract LJ-14 energy Suvardhan Jonnalagadda
[gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD Quin K
[gmx-users] dssp version of gromacs 2019.3 Iman Katouzian
[gmx-users] Regarding high RMSD Ashma Khan
[gmx-users] Regarding high RMSD Ashma Khan
[gmx-users] Regarding high RMSD Ashma Khan
[gmx-users] Regarding rdf and number of molecules in the FSS of tetramer Ashma Khan
[gmx-users] Lambda Weights from Expanded Ensemble Code Daniel Kozuch
[gmx-users] Lambda Weights from Expanded Ensemble Code Daniel Kozuch
[gmx-users] Regarding REMD using gromacs 4.5.5 in the implicit solvent Amit Kumar
[gmx-users] Position restrain and other error while doing simulation Navneet Kumar
[gmx-users] Position restrain and other error while doing simulation Navneet Kumar
[gmx-users] GROMOS forcefields Navneet Kumar
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Navneet Kumar
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Navneet Kumar
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Navneet Kumar
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Navneet Kumar
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Navneet Kumar
[gmx-users] Remove water molecules from .tpr file Navneet Kumar
[gmx-users] Atomic/residue fluctuations in z direction Pradeepa Kumari
[gmx-users] charmm gui pdb to gro. Sahil Lall
[gmx-users] Cell Membrane Potential Frank Lam
[gmx-users] Extract LJ-14 energy Justin Lemkul
[gmx-users] atom moved too far Justin Lemkul
[gmx-users] What is the "gen-vel" used for? Justin Lemkul
[gmx-users] What is the "gen-vel" used for? Justin Lemkul
[gmx-users] nrexcl value for ions Justin Lemkul
[gmx-users] Atomic/residue fluctuations in z direction Justin Lemkul
[gmx-users] query regarding center of mass removal Justin Lemkul
[gmx-users] GROMOS forcefields Justin Lemkul
[gmx-users] query regarding center of mass removal Justin Lemkul
[gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD Justin Lemkul
[gmx-users] atom moved too far Justin Lemkul
[gmx-users] CMAP format on GROMCACS Justin Lemkul
[gmx-users] The maxwarn fatal errors Justin Lemkul
[gmx-users] Simulated Annealing command line Justin Lemkul
[gmx-users] Simulated Annealing command line Justin Lemkul
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Justin Lemkul
[gmx-users] system has non zero net charge Justin Lemkul
[gmx-users] Comparing the RMSD of an in silico variant to a crystal structure. Justin Lemkul
[gmx-users] CMAP format on GROMACS Justin Lemkul
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues Justin Lemkul
[gmx-users] Is minimization and equilibration needed for umbrella sampling? Justin Lemkul
[gmx-users] cannot load the xtc file (without PBC) to VMD Justin Lemkul
[gmx-users] Query regarding do_dssp program Justin Lemkul
[gmx-users] Query regarding do_dssp program Justin Lemkul
[gmx-users] Is minimization and equilibration needed for umbrella sampling? Justin Lemkul
[gmx-users] Query regarding do_dssp program Justin Lemkul
[gmx-users] Umbrella sampling with restraint on the center of mass of ligand Justin Lemkul
[gmx-users] Hydrogen bonding criteria in Gromacs Justin Lemkul
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? Justin Lemkul
[gmx-users] cmaptypes format Justin Lemkul
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? Justin Lemkul
[gmx-users] Hydrogen bonding criteria in Gromacs Justin Lemkul
[gmx-users] com motion and position restraints may cause artifacts Justin Lemkul
[gmx-users] pdb2gmx picks up the wrong .tdb files? Justin Lemkul
[gmx-users] pdb2gmx picks up the wrong .tdb files? Justin Lemkul
[gmx-users] pdb2gmx picks up the wrong .tdb files? Justin Lemkul
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? Justin Lemkul
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? Justin Lemkul
[gmx-users] pdb2gmx picks up the wrong .tdb files? Justin Lemkul
[gmx-users] com motion and position restraints may cause artifacts Justin Lemkul
[gmx-users] State of Matter Justin Lemkul
[gmx-users] how to include multiple energy groups for interaction energy calculation? Justin Lemkul
[gmx-users] Selection/modifying tpr file Justin Lemkul
[gmx-users] Protein pore collapse during simulation. Justin Lemkul
[gmx-users] Regarding high RMSD Justin Lemkul
[gmx-users] RDF between larger molecules Justin Lemkul
[gmx-users] RDF between larger molecules Justin Lemkul
[gmx-users] Making an index file for specific solvent molecules Justin Lemkul
[gmx-users] how to include multiple energy groups for interaction energy calculation? Justin Lemkul
[gmx-users] Error No Such Moleculetype System Justin Lemkul
[gmx-users] using do_dssp secondary structural analysis, beta-sheet issues Justin Lemkul
[gmx-users] Protein pore collapse during simulation. Justin Lemkul
[gmx-users] Build polymers with pdb2gmx Justin Lemkul
[gmx-users] choice of ΔQm Optimized Energy Justin Lemkul
[gmx-users] Charmm to Gromacs itps Justin Lemkul
[gmx-users] gmx msd Justin Lemkul
[gmx-users] Assertion failed: Condition: bX Justin Lemkul
[gmx-users] Remove water molecules from .tpr file Justin Lemkul
[gmx-users] choice of ?Qm Optimized Energy Justin Lemkul
[gmx-users] Charmm to Gromacs itps Justin Lemkul
[gmx-users] Customize gromac FF for lipid parameters Justin Lemkul
[gmx-users] constant x-y plane area for membrane simulations. Justin Lemkul
[gmx-users] Charmm to Gromacs itps Justin Lemkul
[gmx-users] Build polymers with pdb2gmx Li, Shi
[gmx-users] Analysis with .sh file Li, Shi
[gmx-users] Hamiltonian replica exchange Qinghua Liao
[gmx-users] Dipole moment and dielectric constant - gmx dipoles Philip Loche
[gmx-users] gmx msd Maria Luisa
[gmx-users] gmx msd Maria Luisa
[gmx-users] Is minimization and equilibration needed for umbrella sampling? Qing Lv
[gmx-users] Is minimization and equilibration needed for umbrella sampling? Qing Lv
[gmx-users] Error bar for umbrella sampling? Qing Lv
[gmx-users] Error bar for umbrella sampling? Qing Lv
[gmx-users] nrexcl value for ions Dhrubajyoti Maji
[gmx-users] nrexcl value for ions Dhrubajyoti Maji
[gmx-users] cut-off scheme Dhrubajyoti Maji
[gmx-users] cut-off scheme Dhrubajyoti Maji
[gmx-users] TraPPE-EH in GROMACS Dhrubajyoti Maji
[gmx-users] Fourier dihedrals Erik Marklund
[gmx-users] Number of bins for wham and umbrella sampling / PMF Andreas Mecklenfeld
[gmx-users] Troubleshooting Error Message: Invalid Index Group References Travis Meyer
[gmx-users] Troubleshooting Error Message: Invalid Index Group References Travis Meyer
[gmx-users] gmx distance error - invalid index with -f vs -s input file Travis Meyer
[gmx-users] gmx distance error - invalid index with -f vs -s input file Travis Meyer
[gmx-users] Vibrational spectra of amide I using gromacs André Farias de Moura
[gmx-users] Vibrational spectra of amide I using gromacs André Farias de Moura
[gmx-users] Vibrational spectra of amide I using gromacs André Farias de Moura
[gmx-users] Regarding Secondary Structure Analysis Nagaraju Mulpuri
[gmx-users] Secondary Structure Analysis using do_dssp Nagaraju Mulpuri
[gmx-users] using do_dssp secondary structural analysis, beta-sheet issues Nagaraju Mulpuri
[gmx-users] cluster analysis_group selection Muthusankar
[gmx-users] State of Matter Sina Omrani
[gmx-users] State of Matter Sina Omrani
[gmx-users] Correlation Functions Sina Omrani
[gmx-users] Correlation Functions Sina Omrani
[gmx-users] Protein breaking apart in implicit solvent MD simulations using GROMACS Baswanth Oruganti
[gmx-users] cannot load the xtc file (without PBC) to VMD Lalehan Ozalp
[gmx-users] cannot load the xtc file (without PBC) to VMD Lalehan Ozalp
[gmx-users] cannot load the xtc file (without PBC) to VMD Lalehan Ozalp
[gmx-users] Hydrogen bonding criteria in Gromacs Pandya, Akash
[gmx-users] How to calculate the number of ligand and water molecules around protein? Pandya, Akash
[gmx-users] Diffusion Coefficient for hydration waters Pandya, Akash
[gmx-users] .dat file from gmx densmap does not match prescribed size Michele Pellegrino
[gmx-users] .dat file from gmx densmap does not match prescribed size Michele Pellegrino
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Michele Pellegrino
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Michele Pellegrino
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Michele Pellegrino
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Michele Pellegrino
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Michele Pellegrino
[gmx-users] MD simulation stops without any error/warning message Michele Pellegrino
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize Michele Pellegrino
[gmx-users] MD simulation stops without any error/warning message Michele Pellegrino
[gmx-users] Charmm to Gromacs itps Michele Pellegrino
[gmx-users] COM removal note Michele Pellegrino
[gmx-users] Ran into trouble installing Gromacs API Marko Petrovic
[gmx-users] Ran into trouble installing Gromacs API Marko Petrovic
[gmx-users] charting Ligand's movement in the binding pocket Prasanth G, Research Scholar
[gmx-users] is GPU peer access(RDMA) supported with inter-node and gmx2020 mpi version? Szilárd Páll
[gmx-users] Gromacs 2019 - Ryzen Architecture Szilárd Páll
[gmx-users] Error: Cannot find AVX 512F compiler flag Szilárd Páll
[gmx-users] gromacs-2020 build gcc/nvcc error Szilárd Páll
[gmx-users] gromacs-2020 build gcc/nvcc error Szilárd Páll
[gmx-users] gromacs-2020 build gcc/nvcc error Szilárd Páll
[gmx-users] gromacs-2020 build gcc/nvcc error Szilárd Páll
[gmx-users] RDF between larger molecules Gmx QA
[gmx-users] RDF between larger molecules Gmx QA
[gmx-users] how to set system for absolute free enegy calculation of ligand in protein Sadaf Rani
[gmx-users] A list of missing interactions Sadaf Rani
[gmx-users] Fwd: A list of missing interactions Sadaf Rani
[gmx-users] how to set vdw_lambdas and coul_lambdas Sadaf Rani
[gmx-users] different number of charges and atoms of ligand in free energy calculation Sadaf Rani
[gmx-users] Problem of lincs in free energy calculations Sadaf Rani
[gmx-users] (no subject) Sadaf Rani
[gmx-users] Fwd: Sadaf Rani
[gmx-users] list of missing interactions Sadaf Rani
[gmx-users] Assertion failed: Condition: bX Sadaf Rani
[gmx-users] gmx_topolbuild error (aayattimg at bose.res.in) Ray, Bruce D
[gmx-users] The pull code Majid Rezaei
[gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers Schulz, Roland
[gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers Schulz, Roland
[gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers Schulz, Roland
[gmx-users] Error: Cannot find AVX 512F compiler flag Schulz, Roland
[gmx-users] specific heat calculation using "gmx dos" Pragati Sharma
[gmx-users] Cut off (1.2 -1.5 nm) with OPLS forcefield Pragati Sharma
[gmx-users] Uniaxial elongation using deform option Pragati Sharma
[gmx-users] molecule breakage during minimization Yogesh Sharma
[gmx-users] system has non zero net charge Yogesh Sharma
[gmx-users] charmm gui pdb to gro. Yogesh Sharma
[gmx-users] charmm gui pdb to gro Yogesh Sharma
[gmx-users] Protein pore collapse during simulation. Yogesh Sharma
[gmx-users] Protein pore collapse during simulation. Yogesh Sharma
[gmx-users] choice of ΔQm Optimized Energy Yogesh Sharma
[gmx-users] choice of ?Qm Optimized Energy Yogesh Sharma
[gmx-users] Customize gromac FF for lipid parameters Yogesh Sharma
[gmx-users] Lambda Weights from Expanded Ensemble Code Michael Shirts
[gmx-users] Selection/modifying tpr file Roshan Shrestha
[gmx-users] CfP EuroVis 2020 Workshop on Molecular Graphics and Visual Analysis of Molecular Data Björn Sommer
[gmx-users] gmx trjconv Giuseppe R Del Sorbo
[gmx-users] lifetime of hydrogen bond David van der Spoel
[gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize David van der Spoel
[gmx-users] Dipole moment and dielectric constant - gmx dipoles David van der Spoel
[gmx-users] Query regarding do_dssp program Sundari
[gmx-users] Query regarding do_dssp program Sundari
[gmx-users] Query regarding do_dssp program Sundari
[gmx-users] Query regarding do_dssp program Sundari
[gmx-users] How to find free energy barrier from FEL which generated from dPCA? Seera Suryanarayana
[gmx-users] Make index command in gromacs Alessandra Villa
[gmx-users] Position restrains calculation of virial Alessandra Villa
[gmx-users] gmx_topolbuild error Alessandra Villa
[gmx-users] Query regarding do_dssp program Alessandra Villa
[gmx-users] Cut off (1.2 -1.5 nm) with OPLS forcefield Alessandra Villa
[gmx-users] Loading topology into vmd Alessandra Villa
[gmx-users] Loading topology into vmd Alessandra Villa
[gmx-users] gmx genconf Alessandra Villa
[gmx-users] gmx genconf Alessandra Villa
[gmx-users] cut-off scheme Alessandra Villa
[gmx-users] cut-off scheme Alessandra Villa
[gmx-users] Regarding high RMSD Alessandra Villa
[gmx-users] Regarding high RMSD Alessandra Villa
[gmx-users] Troubleshooting Error Message: Invalid Index Group References Alessandra Villa
[gmx-users] Troubleshooting Error Message: Invalid Index Group References Alessandra Villa
[gmx-users] com motion and position restraints may cause artifacts Alessandra Villa
[gmx-users] A list of missing interactions Alessandra Villa
[gmx-users] Regarding high RMSD Alessandra Villa
[gmx-users] Problem while running equilibration Alessandra Villa
[gmx-users] Uniaxial elongation using deform option Alessandra Villa
[gmx-users] compressibility values in coarse grained simulations Alessandra Villa
[gmx-users] compressibility values in coarse grained simulations Alessandra Villa
[gmx-users] Assertion failed for the REMD tutorial Alessandra Villa
[gmx-users] Assertion failed for the REMD tutorial Alessandra Villa
[gmx-users] How to set the temperatures for REMD? Alessandra Villa
[gmx-users] MD simulation stops without any error/warning message Alessandra Villa
[gmx-users] MD simulation stops without any error/warning message Alessandra Villa
[gmx-users] Calculation of an energy term for stretching Alessandra Villa
[gmx-users] Calculation of an energy term for stretching Alessandra Villa
[gmx-users] gmx distance error - invalid index with -f vs -s input file Alessandra Villa
[gmx-users] TraPPE-EH in GROMACS Alessandra Villa
[gmx-users] How to use TIP4P-ICE water model Alessandra Villa
[gmx-users] How to use TIP4P-ICE water model Alessandra Villa
[gmx-users] Position restrain and other error while doing simulation Quyen V. Vu
[gmx-users] Position restrain and other error while doing simulation Quyen V. Vu
[gmx-users] Error bar for umbrella sampling? Quyen V. Vu
[gmx-users] Hydrogen bonding criteria in Gromacs Quyen V. Vu
[gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1? Quyen V. Vu
[gmx-users] (no subject) Quyen V. Vu
[gmx-users] pdb2gmx picks up the wrong .tdb files? András Ferenc WACHA
[gmx-users] pdb2gmx picks up the wrong .tdb files? András Ferenc WACHA
[gmx-users] pdb2gmx picks up the wrong .tdb files? András Ferenc WACHA
[gmx-users] pdb2gmx picks up the wrong .tdb files? András Ferenc WACHA
[gmx-users] molecule breakage during minimization Dallas Warren
[gmx-users] compressibility values in coarse grained simulations Dallas Warren
[gmx-users] gmx trjconv Dallas Warren
[gmx-users] Selection/modifying tpr file Dallas Warren
[gmx-users] DNA-Protein complex Dallas Warren
[gmx-users] Remove water molecules from .tpr file John Whittaker
[gmx-users] Analysis with .sh file John Whittaker
[gmx-users] gromacs-2020 build gcc/nvcc error Ryan Woltz
[gmx-users] gromacs-2020 build gcc/nvcc error Ryan Woltz
[gmx-users] gromacs-2020 build gcc/nvcc error Ryan Woltz
[gmx-users] Gromacs 2019 - Ryzen Architecture Sandro Wrzalek
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Rabeta Yeasmin
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Rabeta Yeasmin
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation Rabeta Yeasmin
[gmx-users] What is the "gen-vel" used for? Sun Yeping
[gmx-users] What is the "gen-vel" used for? Sun Yeping
[gmx-users] What is the "gen-vel" used for? Sun Yeping
[gmx-users] Hydrogen bonding criteria in Gromacs Myunggi Yi
[gmx-users] Hydrogen bonding criteria in Gromacs Myunggi Yi
[gmx-users] Error No Such Moleculetype System Poncho Arvayo Zatarain
[gmx-users] cluster analysis_group selection Jin Zhang
[gmx-users] Replica exchange probabilities and extend simulation hind ahmed
[gmx-users] Visualize replica exchange hind ahmed
[gmx-users] solute tempering (REST2) hind ahmed
[gmx-users] Hamiltonian replica exchange hind ahmed
[gmx-users] GROMACS 2020 official release Paul bauer
[gmx-users] Gromacs 2019 - Ryzen Architecture Paul bauer
[gmx-users] GROMACS 2020 official release Paul bauer
[gmx-users] gmx_topolbuild error aayattimg at bose.res.in
[gmx-users] DNA-Protein complex aayattimg at bose.res.in
[gmx-users] Charmm to Gromacs itps atb files
[gmx-users] Charmm to Gromacs itps atb files
[gmx-users] Charmm to Gromacs itps atb files
[gmx-users] gromacs.org_gmx-users Digest, Vol 189, Issue 80, 2. Re: Analysis with .sh file (Li, Shi) ric.concu at gmail.com
[gmx-users] lifetime of hydrogen bond spss4 at iacs.res.in
[gmx-users] lifetime of hydrogen bond spss4 at iacs.res.in
[gmx-users] cannot load the xtc file (without PBC) to VMD spss4 at iacs.res.in
[gmx-users] cannot load the xtc file (without PBC) to VMD spss4 at iacs.res.in
[gmx-users] How to use TIP4P-ICE water model mbhendle
[gmx-users] 3D monitors tarzan p
[gmx-users] Strange self-coefficient data with "-update gpu" option qing shao
[gmx-users] gmx dens charge anupama sharma
[gmx-users] GROMOS forcefields shakira shukoor
[gmx-users] GROMOS forcefields shakira shukoor
[gmx-users] Which content is in gmx wham -hist output file? shakira shukoor
[gmx-users] Which content is in gmx wham -hist output file? shakira shukoor
[gmx-users] Error bar for umbrella sampling? shakira shukoor
[gmx-users] Calculation of an energy term for stretching nikolaev at spbau.ru
[gmx-users] how to include multiple energy groups for interaction energy calculation? sunyeping
[gmx-users] how to include multiple energy groups for interaction energy calculation? sunyeping
[gmx-users] Umbrella sampling with restraint on the center of mass of ligand gmx user1
[gmx-users] Error bar for umbrella sampling? Александр Лашков
[gmx-users] how to include multiple energy groups for interaction energy calculation? Александр Лашков
[gmx-users] how to include multiple energy groups for interaction energy calculation? Александр Лашков
[gmx-users] how to set vdw_lambdas and coul_lambdas Александр Лашков
[gmx-users] Problem of lincs in free energy calculations Александр Лашков
[gmx-users] Lipids running out of simulation box 徐以会
[gmx-users] The maxwarn fatal errors 변진영
[gmx-users] Which content is in gmx wham -hist output file? 변진영
[gmx-users] Which content is in gmx wham -hist output file? 변진영

Last message date: Fri Jan 31 20:23:45 CET 2020
Archived on: Fri Jan 31 20:23:46 CET 2020

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