January 2020 Archives by thread

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Starting: Wed Jan 1 18:09:34 CET 2020
Ending: Fri Jan 31 20:23:45 CET 2020
Messages: 404

• [gmx-users] GROMACS 2020 official release   Paul bauer
  • [gmx-users] GROMACS 2020 official release   Paul bauer
• [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers   Lyudmyla Dorosh
• [gmx-users] lifetime of hydrogen bond   spss4 at iacs.res.in
  • [gmx-users] lifetime of hydrogen bond   David van der Spoel
    • [gmx-users] lifetime of hydrogen bond   spss4 at iacs.res.in
• [gmx-users] Extract LJ-14 energy   Suvardhan Jonnalagadda
  • [gmx-users] Extract LJ-14 energy   Justin Lemkul
• [gmx-users] Gromacs 2019 - Ryzen Architecture   Sandro Wrzalek
  • [gmx-users] Gromacs 2019 - Ryzen Architecture   Paul bauer
    • [gmx-users] Gromacs 2019 - Ryzen Architecture   Kevin Boyd
      • [gmx-users] Gromacs 2019 - Ryzen Architecture   Szilárd Páll
• [gmx-users] atom moved too far   Christos Deligkaris
  • [gmx-users] atom moved too far   Justin Lemkul
    • [gmx-users] atom moved too far   Christos Deligkaris
      • [gmx-users] atom moved too far   Justin Lemkul
      • [gmx-users] atom moved too far   Christos Deligkaris
• [gmx-users] molecule breakage during minimization   Yogesh Sharma
  • [gmx-users] molecule breakage during minimization   Dallas Warren
• [gmx-users] What is the "gen-vel" used for?   Sun Yeping
  • [gmx-users] What is the "gen-vel" used for?   Sun Yeping
    • [gmx-users] What is the "gen-vel" used for?   Justin Lemkul
      • [gmx-users] What is the "gen-vel" used for?   Sun Yeping
      • [gmx-users] What is the "gen-vel" used for?   Justin Lemkul
• [gmx-users] nrexcl value for ions   Dhrubajyoti Maji
  • [gmx-users] nrexcl value for ions   Justin Lemkul
    • [gmx-users] nrexcl value for ions   Dhrubajyoti Maji
• [gmx-users] specific heat calculation using "gmx dos"   Pragati Sharma
  • [gmx-users] specific heat calculation using "gmx dos"   Christian Blau
• [gmx-users] compressibility values in coarse grained simulations   Deepanshi .
  • [gmx-users] compressibility values in coarse grained simulations   Dallas Warren
  • [gmx-users] compressibility values in coarse grained simulations   Deepanshi .
  • [gmx-users] compressibility values in coarse grained simulations   Alessandra Villa
• [gmx-users] Extending simulation   Shradheya R.R. Gupta
  • [gmx-users] Extending simulation   Naveen BK
• [gmx-users] Atomic/residue fluctuations in z direction   Pradeepa Kumari
  • [gmx-users] Atomic/residue fluctuations in z direction   Justin Lemkul
• [gmx-users] Position restrain and other error while doing simulation   Navneet Kumar
  • [gmx-users] Position restrain and other error while doing simulation   Quyen V. Vu
    • [gmx-users] Position restrain and other error while doing simulation   Navneet Kumar
• [gmx-users] Bilayer exploding with semiisotropic coupling   Namit Chaudhary
  • [gmx-users] Bilayer exploding with semiisotropic coupling   Namit Chaudhary
    • [gmx-users] Bilayer exploding with semiisotropic coupling   Kevin Boyd
      • [gmx-users] Bilayer exploding with semiisotropic coupling   Paul Bauer
    • [gmx-users] Bilayer exploding with semiisotropic coupling   Namit Chaudhary
• [gmx-users] query regarding center of mass removal   Snehasis Chatterjee
  • [gmx-users] query regarding center of mass removal   Justin Lemkul
• [gmx-users] What is the "gen-vel" used for?   Neena Susan Eappen
• [gmx-users] amide-capped C-terminus; OPLS force field   Neena Susan Eappen
• [gmx-users] query regarding center of mass removal   Snehasis Chatterjee
  • [gmx-users] query regarding center of mass removal   Justin Lemkul
• [gmx-users] The pull code   Majid Rezaei
• [gmx-users] GROMOS forcefields   shakira shukoor
  • [gmx-users] GROMOS forcefields   Kenny Goossens
    • [gmx-users] GROMOS forcefields   Navneet Kumar
    • [gmx-users] GROMOS forcefields   Justin Lemkul
    • [gmx-users] GROMOS forcefields   shakira shukoor
• [gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD   Quin K
  • [gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD   Justin Lemkul
• [gmx-users] Simulated Annealing command line   Neena Susan Eappen
  • [gmx-users] Simulated Annealing command line   Kenny Goossens
  • [gmx-users] Simulated Annealing command line   Neena Susan Eappen
    • [gmx-users] Simulated Annealing command line   Justin Lemkul
    • [gmx-users] Simulated Annealing command line   Neena Susan Eappen
      • [gmx-users] Simulated Annealing command line   Justin Lemkul
• [gmx-users] gmx covar error in gromacs2019.x   008
• [gmx-users] CMAP format on GROMCACS   Marcelo Depólo
  • [gmx-users] CMAP format on GROMCACS   Justin Lemkul
• [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers   Schulz, Roland
• [gmx-users] The maxwarn fatal errors   변진영
  • [gmx-users] The maxwarn fatal errors   Justin Lemkul
  • [gmx-users] The maxwarn fatal errors   Mark Abraham
• [gmx-users] Make index command in gromacs   Shan Jayasinghe
  • [gmx-users] Make index command in gromacs   Alessandra Villa
  • [gmx-users] Make index command in gromacs   Christian Blau
    • [gmx-users] Make index command in gromacs   Shan Jayasinghe
• [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Navneet Kumar
  • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Navneet Kumar
    • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Christian Blau
      • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Navneet Kumar
      • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Justin Lemkul
      • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Navneet Kumar
      • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Justin Lemkul
      • [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues   Navneet Kumar
• [gmx-users] How to rotate the molecule in box   Christian Blau
• [gmx-users] cant compute msd   Devargya Chakraborty
  • [gmx-users] cant compute msd   Christian Blau
    • [gmx-users] cant compute msd   Devargya Chakraborty
• [gmx-users] Position restrains calculation of virial   Johannes Hermann
  • [gmx-users] Position restrains calculation of virial   Alessandra Villa
• [gmx-users] system has non zero net charge   Yogesh Sharma
  • [gmx-users] system has non zero net charge   Gudrun Gygli
  • [gmx-users] system has non zero net charge   Justin Lemkul
• [gmx-users] how to set system for absolute free enegy calculation of ligand in protein   Sadaf Rani
• [gmx-users] Vibrational spectra of amide I using gromacs   Mijiddorj B
  • [gmx-users] Vibrational spectra of amide I using gromacs   André Farias de Moura
• [gmx-users] CMAP format on GROMACS   Marcelo Depólo
  • [gmx-users] CMAP format on GROMACS   Justin Lemkul
• [gmx-users] is GPU peer access(RDMA) supported with inter-node and gmx2020 mpi version?   Jimmy Chen
  • [gmx-users] is GPU peer access(RDMA) supported with inter-node and gmx2020 mpi version?   Szilárd Páll
• [gmx-users] Comparing the RMSD of an in silico variant to a crystal structure.   Matthew Fisher
  • [gmx-users] Comparing the RMSD of an in silico variant to a crystal structure.   Bratin Kumar Das
  • [gmx-users] Comparing the RMSD of an in silico variant to a crystal structure.   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 189, Issue 18   Mijiddorj B
• [gmx-users] Vibrational spectra of amide I using gromacs   Mijiddorj B
  • [gmx-users] Vibrational spectra of amide I using gromacs   André Farias de Moura
• [gmx-users] charting Ligand's movement in the binding pocket   Prasanth G, Research Scholar
• [gmx-users] Replica exchange probabilities and extend simulation   hind ahmed
  • [gmx-users] Replica exchange probabilities and extend simulation   Christian Blau
• [gmx-users] Visualize replica exchange   hind ahmed
  • [gmx-users] Visualize replica exchange   Christian Blau
• [gmx-users] CfP EuroVis 2020 Workshop on Molecular Graphics and Visual Analysis of Molecular Data   Björn Sommer
• [gmx-users] Lipids running out of simulation box   徐以会
• [gmx-users] gmx_topolbuild error   aayattimg at bose.res.in
  • [gmx-users] gmx_topolbuild error   Alessandra Villa
• [gmx-users] Which content is in gmx wham -hist output file?   변진영
  • [gmx-users] Which content is in gmx wham -hist output file?   shakira shukoor
    • [gmx-users] Which content is in gmx wham -hist output file?   변진영
      • [gmx-users] Which content is in gmx wham -hist output file?   shakira shukoor
• [gmx-users] Protein breaking apart in implicit solvent MD simulations using GROMACS   Baswanth Oruganti
• [gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests   João M. Damas
  • [gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests   Mark Abraham
    • [gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests   João M. Damas
• [gmx-users] Vibrational spectra of amide I using gromacs   Mijiddorj B
  • [gmx-users] Is minimization and equilibration needed for umbrella sampling?   Qing Lv
    • [gmx-users] Is minimization and equilibration needed for umbrella sampling?   Justin Lemkul
      • [gmx-users] Is minimization and equilibration needed for umbrella sampling?   Qing Lv
      • [gmx-users] Is minimization and equilibration needed for umbrella sampling?   Justin Lemkul
      • [gmx-users] Error bar for umbrella sampling?   Qing Lv
      • [gmx-users] Error bar for umbrella sampling?   Quyen V. Vu
      • [gmx-users] Error bar for umbrella sampling?   Александр Лашков
      • [gmx-users] Error bar for umbrella sampling?   Qing Lv
      • [gmx-users] Error bar for umbrella sampling?   shakira shukoor
• [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers   Cardenas, Alfredo E
  • [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers   Schulz, Roland
• [gmx-users] How to find free energy barrier from FEL which generated from dPCA?   Seera Suryanarayana
• [gmx-users] Query regarding do_dssp program   Sundari
  • [gmx-users] Query regarding do_dssp program   Alessandra Villa
    • [gmx-users] Query regarding do_dssp program   Sundari
      • [gmx-users] Query regarding do_dssp program   Justin Lemkul
      • [gmx-users] Query regarding do_dssp program   Sundari
      • [gmx-users] Query regarding do_dssp program   Justin Lemkul
      • [gmx-users] Query regarding do_dssp program   Sundari
      • [gmx-users] Query regarding do_dssp program   Justin Lemkul
• [gmx-users] solute tempering (REST2)   hind ahmed
  • [gmx-users] solute tempering (REST2)   Nicolas Cheron
• [gmx-users] Cut off (1.2 -1.5 nm) with OPLS forcefield   Pragati Sharma
  • [gmx-users] Cut off (1.2 -1.5 nm) with OPLS forcefield   Alessandra Villa
• [gmx-users] cannot load the xtc file (without PBC) to VMD   Lalehan Ozalp
  • [gmx-users] cannot load the xtc file (without PBC) to VMD   Justin Lemkul
  • [gmx-users] cannot load the xtc file (without PBC) to VMD   spss4 at iacs.res.in
    • [gmx-users] cannot load the xtc file (without PBC) to VMD   Lalehan Ozalp
      • [gmx-users] cannot load the xtc file (without PBC) to VMD   spss4 at iacs.res.in
      • [gmx-users] cannot load the xtc file (without PBC) to VMD   Lalehan Ozalp
• [gmx-users] com motion and position restraints may cause artifacts   Christos Deligkaris
  • [gmx-users] com motion and position restraints may cause artifacts   Alessandra Villa
    • [gmx-users] com motion and position restraints may cause artifacts   Justin Lemkul
      • [gmx-users] com motion and position restraints may cause artifacts   Christos Deligkaris
      • [gmx-users] com motion and position restraints may cause artifacts   Berk Hess
      • [gmx-users] com motion and position restraints may cause artifacts   Justin Lemkul
• [gmx-users] Number of bins for wham and umbrella sampling / PMF   Andreas Mecklenfeld
• [gmx-users] Loading topology into vmd   Miro Astore
  • [gmx-users] Loading topology into vmd   Kenny Goossens
    • [gmx-users] Loading topology into vmd   Miro Astore
      • [gmx-users] Loading topology into vmd   Alessandra Villa
      • [gmx-users] Loading topology into vmd   Miro Astore
• [gmx-users] charmm gui pdb to gro.   Yogesh Sharma
  • [gmx-users] charmm gui pdb to gro.   Sahil Lall
• [gmx-users] charmm gui pdb to gro   Yogesh Sharma
• [gmx-users] inter-chain disulfide bridges   HERNANDEZ ALBA Oscar (IPHC)
• [gmx-users] Troubleshooting Error Message: Invalid Index Group References   Travis Meyer
  • [gmx-users] Troubleshooting Error Message: Invalid Index Group References   Alessandra Villa
• [gmx-users] cut-off scheme   Dhrubajyoti Maji
  • [gmx-users] cut-off scheme   Alessandra Villa
    • [gmx-users] cut-off scheme   Dhrubajyoti Maji
• [gmx-users] Calculating C-alpha RMSD for coarse grained simulation   Rabeta Yeasmin
  • [gmx-users] Calculating C-alpha RMSD for coarse grained simulation   Bhupendra Dandekar
• [gmx-users] A list of missing interactions   Sadaf Rani
  • [gmx-users] Fwd: A list of missing interactions   Sadaf Rani
  • [gmx-users] A list of missing interactions   Alessandra Villa
• [gmx-users] Error: Cannot find AVX 512F compiler flag   Shlomit Afgin
  • [gmx-users] Error: Cannot find AVX 512F compiler flag   Szilárd Páll
    • [gmx-users] Error: Cannot find AVX 512F compiler flag   Shlomit Afgin
      • [gmx-users] Error: Cannot find AVX 512F compiler flag   Mark Abraham
      • [gmx-users] Error: Cannot find AVX 512F compiler flag   Shlomit Afgin
  • [gmx-users] Error: Cannot find AVX 512F compiler flag   Schulz, Roland
  • [gmx-users] Error: Cannot find AVX 512F compiler flag   Tru Huynh
    • [gmx-users] Error: Cannot find AVX 512F compiler flag   Mark Abraham
    • [gmx-users] Error: Cannot find AVX 512F compiler flag   Shlomit Afgin
• [gmx-users] Regarding high RMSD   Ashma Khan
  • [gmx-users] Regarding high RMSD   Alessandra Villa
• [gmx-users] Umbrella sampling with restraint on the center of mass of ligand   gmx user1
  • [gmx-users] Umbrella sampling with restraint on the center of mass of ligand   Justin Lemkul
• [gmx-users] Hydrogen bonding criteria in Gromacs   Pandya, Akash
  • [gmx-users] Hydrogen bonding criteria in Gromacs   Quyen V. Vu
  • [gmx-users] Hydrogen bonding criteria in Gromacs   Justin Lemkul
    • [gmx-users] Hydrogen bonding criteria in Gromacs   Myunggi Yi
      • [gmx-users] Hydrogen bonding criteria in Gromacs   Justin Lemkul
      • [gmx-users] Hydrogen bonding criteria in Gromacs   Myunggi Yi
• [gmx-users] gmx genconf   Alex
  • [gmx-users] gmx genconf   Christian Blau
  • [gmx-users] gmx genconf   Alessandra Villa
• [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   ZHANG Cheng
  • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   Justin Lemkul
  • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   ZHANG Cheng
    • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   Justin Lemkul
    • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   ZHANG Cheng
      • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   Justin Lemkul
      • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   Quyen V. Vu
      • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   ZHANG Cheng
      • [gmx-users] Why it is run so slow in gromacs 2019.3 compared to VERSION 5.1.1?   Justin Lemkul
• [gmx-users] cmaptypes format   Marcelo Depólo
  • [gmx-users] cmaptypes format   Justin Lemkul
• [gmx-users] Lambda Weights from Expanded Ensemble Code   Daniel Kozuch
  • [gmx-users] Lambda Weights from Expanded Ensemble Code   Michael Shirts
    • [gmx-users] Lambda Weights from Expanded Ensemble Code   Daniel Kozuch
• [gmx-users] Available Post-doc position   Jan Brezovsky
• [gmx-users] pdb2gmx picks up the wrong .tdb files?   András Ferenc WACHA
  • [gmx-users] pdb2gmx picks up the wrong .tdb files?   Justin Lemkul
    • [gmx-users] pdb2gmx picks up the wrong .tdb files?   András Ferenc WACHA
      • [gmx-users] pdb2gmx picks up the wrong .tdb files?   Justin Lemkul
      • [gmx-users] pdb2gmx picks up the wrong .tdb files?   András Ferenc WACHA
      • [gmx-users] pdb2gmx picks up the wrong .tdb files?   Justin Lemkul
      • [gmx-users] pdb2gmx picks up the wrong .tdb files?   András Ferenc WACHA
      • [gmx-users] pdb2gmx picks up the wrong .tdb files?   Justin Lemkul
• [gmx-users] Calculating C-alpha RMSD for coarse grained simulation   Rabeta Yeasmin
  • [gmx-users] Calculating C-alpha RMSD for coarse grained simulation   Bhupendra Dandekar
    • [gmx-users] Calculating C-alpha RMSD for coarse grained simulation   Rabeta Yeasmin
      • [gmx-users] Calculating C-alpha RMSD for coarse grained simulation   Bhupendra Dandekar
• [gmx-users] gmx trjconv   Giuseppe R Del Sorbo
  • [gmx-users] gmx trjconv   Dallas Warren
• [gmx-users] Regarding high RMSD   Ashma Khan
  • [gmx-users] Regarding high RMSD   Alessandra Villa
• [gmx-users] Can I use gromacs order to compute tetrahedral order parameter of water?   Subhadip Basu
• [gmx-users] cluster analysis_group selection   Muthusankar
• [gmx-users] Problem while running equilibration   Nirali Desai
  • [gmx-users] Problem while running equilibration   Alessandra Villa
• [gmx-users] cluster analysis_group selection   Jin Zhang
• [gmx-users] Ran into trouble installing Gromacs API   Marko Petrovic
• [gmx-users] gmx_topolbuild error (aayattimg at bose.res.in)   Ray, Bruce D
• [gmx-users] Troubleshooting Error Message: Invalid Index Group References   Travis Meyer
• [gmx-users] Residue-Specific CMAPS in GROMACS   Marcelo Depólo
• [gmx-users] Regarding high RMSD   Ashma Khan
  • [gmx-users] Regarding high RMSD   Justin Lemkul
• [gmx-users] Strange self-coefficient data with "-update gpu" option   qing shao
• [gmx-users] Protein pore collapse during simulation.   Yogesh Sharma
  • [gmx-users] Protein pore collapse during simulation.   Justin Lemkul
• [gmx-users] Hamiltonian replica exchange   hind ahmed
  • [gmx-users] Hamiltonian replica exchange   Qinghua Liao
• [gmx-users] Selection/modifying tpr file   Roshan Shrestha
  • [gmx-users] Selection/modifying tpr file   Dallas Warren
  • [gmx-users] Selection/modifying tpr file   Justin Lemkul
• [gmx-users] Uniaxial elongation using deform option   Pragati Sharma
  • [gmx-users] Uniaxial elongation using deform option   Alessandra Villa
• [gmx-users] Ran into trouble installing Gromacs API   Eric Irrgang
  • [gmx-users] Ran into trouble installing Gromacs API   Marko Petrovic
• [gmx-users] State of Matter   Sina Omrani
  • [gmx-users] State of Matter   Christian Blau
    • [gmx-users] State of Matter   Sina Omrani
      • [gmx-users] State of Matter   Justin Lemkul
• [gmx-users] how to include multiple energy groups for interaction energy calculation?   sunyeping
  • [gmx-users] how to include multiple energy groups for interaction energy calculation?   Justin Lemkul
    • [gmx-users] how to include multiple energy groups for interaction energy calculation?   sunyeping
      • [gmx-users] how to include multiple energy groups for interaction energy calculation?   Александр Лашков
      • [gmx-users] how to include multiple energy groups for interaction energy calculation?   Александр Лашков
      • [gmx-users] how to include multiple energy groups for interaction energy calculation?   Justin Lemkul
• [gmx-users] dssp version of gromacs 2019.3   Iman Katouzian
• [gmx-users] RDF between larger molecules   Gmx QA
  • [gmx-users] RDF between larger molecules   Justin Lemkul
    • [gmx-users] RDF between larger molecules   Gmx QA
      • [gmx-users] RDF between larger molecules   Justin Lemkul
• [gmx-users] Making an index file for specific solvent molecules   Aharon Gomez
  • [gmx-users] Making an index file for specific solvent molecules   Justin Lemkul
• [gmx-users] Regarding Secondary Structure Analysis   Nagaraju Mulpuri
• [gmx-users] domain decomposition failure   Harry Mark Greenblatt
• [gmx-users] Secondary Structure Analysis using do_dssp   Nagaraju Mulpuri
• [gmx-users] how to set vdw_lambdas and coul_lambdas   Sadaf Rani
  • [gmx-users] how to set vdw_lambdas and coul_lambdas   Александр Лашков
• [gmx-users] different number of charges and atoms of ligand in free energy calculation   Sadaf Rani
• [gmx-users] question regarding gmx helix orientation   SHAHEE ISLAM
• [gmx-users] .dat file from gmx densmap does not match prescribed size   Michele Pellegrino
  • [gmx-users] .dat file from gmx densmap does not match prescribed size   Berk Hess
    • [gmx-users] .dat file from gmx densmap does not match prescribed size   Michele Pellegrino
      • [gmx-users] .dat file from gmx densmap does not match prescribed size   Berk Hess
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Michele Pellegrino
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   David van der Spoel
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Michele Pellegrino
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Michele Pellegrino
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Michele Pellegrino
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Michele Pellegrino
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Christian Blau
      • [gmx-users] .dat file from gmx densmap doestnottmatchtprescribedtsize   Michele Pellegrino
• [gmx-users] Assertion failed for the REMD tutorial   ZHANG Cheng
  • [gmx-users] Assertion failed for the REMD tutorial   Alessandra Villa
• [gmx-users] using do_dssp secondary structural analysis, beta-sheet issues   Nagaraju Mulpuri
  • [gmx-users] using do_dssp secondary structural analysis, beta-sheet issues   Justin Lemkul
• [gmx-users] Error No Such Moleculetype System   Poncho Arvayo Zatarain
  • [gmx-users] Error No Such Moleculetype System   Justin Lemkul
• [gmx-users] top2psf license   Miro Astore
  • [gmx-users] top2psf license   Miro Astore
• [gmx-users] Problem of lincs in free energy calculations   Sadaf Rani
  • [gmx-users] Problem of lincs in free energy calculations   Александр Лашков
• [gmx-users] Fourier dihedrals   Erik Marklund
• [gmx-users] How to set the temperatures for REMD?   ZHANG Cheng
  • [gmx-users] How to set the temperatures for REMD?   Alessandra Villa
• [gmx-users] How to run REMD for EM, NVT, NPT and production run?   ZHANG Cheng
• [gmx-users] MD simulation stops without any error/warning message   Michele Pellegrino
  • [gmx-users] MD simulation stops without any error/warning message   Alessandra Villa
    • [gmx-users] MD simulation stops without any error/warning message   Michele Pellegrino
• [gmx-users] Calculation of an energy term for stretching   nikolaev at spbau.ru
  • [gmx-users] Calculation of an energy term for stretching   Alessandra Villa
• [gmx-users] gmx distance error - invalid index with -f vs -s input file   Travis Meyer
  • [gmx-users] gmx distance error - invalid index with -f vs -s input file   Alessandra Villa
• [gmx-users] Protein pore collapse during simulation.   Yogesh Sharma
  • [gmx-users] Protein pore collapse during simulation.   Justin Lemkul
• [gmx-users] (no subject)   Sadaf Rani
  • [gmx-users] Fwd:   Sadaf Rani
  • [gmx-users] (no subject)   Quyen V. Vu
• [gmx-users] How to calculate the number of ligand and water molecules around protein?   Pandya, Akash
• [gmx-users] Build polymers with pdb2gmx   Li, Shi
  • [gmx-users] Build polymers with pdb2gmx   Justin Lemkul
• [gmx-users] T-REMD stalled - no trr files generated   Daniel Burns
  • [gmx-users] T-REMD stalled - no trr files generated   Mark Abraham
• [gmx-users] gmx distance error - invalid index with -f vs -s input file   Travis Meyer
• [gmx-users] list of missing interactions   Sadaf Rani
• [gmx-users] choice of ΔQm Optimized Energy   Yogesh Sharma
  • [gmx-users] choice of ΔQm Optimized Energy   Justin Lemkul
• [gmx-users] Dipole moment and dielectric constant - gmx dipoles   Iman Ahmadabadi
  • [gmx-users] Dipole moment and dielectric constant - gmx dipoles   Philip Loche
  • [gmx-users] Dipole moment and dielectric constant - gmx dipoles   Iman Ahmadabadi
    • [gmx-users] Dipole moment and dielectric constant - gmx dipoles   David van der Spoel
• [gmx-users] Regarding REMD using gromacs 4.5.5 in the implicit solvent   Amit Kumar
• [gmx-users] learning gromacs   Somdatta Chaudhari
  • [gmx-users] learning gromacs   Miro Astore
• [gmx-users] Charmm to Gromacs itps   atb files
  • [gmx-users] Charmm to Gromacs itps   Michele Pellegrino
  • [gmx-users] Charmm to Gromacs itps   Justin Lemkul
    • [gmx-users] Charmm to Gromacs itps   atb files
      • [gmx-users] Charmm to Gromacs itps   Justin Lemkul
      • [gmx-users] Charmm to Gromacs itps   atb files
      • [gmx-users] Charmm to Gromacs itps   Justin Lemkul
      • [gmx-users] Charmm to Gromacs itps   Miro Astore
• [gmx-users] gmx msd   Maria Luisa
• [gmx-users] Correlation Functions   Sina Omrani
  • [gmx-users] Correlation Functions   Sina Omrani
• [gmx-users] gmx msd   Maria Luisa
  • [gmx-users] gmx msd   Justin Lemkul
• [gmx-users] Diffusion Coefficient for hydration waters   Pandya, Akash
• [gmx-users] Assertion failed: Condition: bX   Sadaf Rani
  • [gmx-users] Assertion failed: Condition: bX   Justin Lemkul
• [gmx-users] Remove water molecules from .tpr file   Navneet Kumar
  • [gmx-users] Remove water molecules from .tpr file   John Whittaker
    • [gmx-users] Remove water molecules from .tpr file   Justin Lemkul
• [gmx-users] trjcat and trjconv performance   Miro Astore
• [gmx-users] choice of ?Qm Optimized Energy   Yogesh Sharma
  • [gmx-users] choice of ?Qm Optimized Energy   Justin Lemkul
• [gmx-users] TraPPE-EH in GROMACS   Dhrubajyoti Maji
  • [gmx-users] TraPPE-EH in GROMACS   Alessandra Villa
• [gmx-users] DNA-Protein complex   Rakesh Bhowmick
  • [gmx-users] DNA-Protein complex   Dallas Warren
    • [gmx-users] DNA-Protein complex   aayattimg at bose.res.in
• [gmx-users] Native contacts similar to "gmx mindist"   ZHANG Cheng
• [gmx-users] COM removal note   Michele Pellegrino
• [gmx-users] gromacs-2020 build gcc/nvcc error   Ryan Woltz
  • [gmx-users] gromacs-2020 build gcc/nvcc error   Szilárd Páll
    • [gmx-users] gromacs-2020 build gcc/nvcc error   Ryan Woltz
      • [gmx-users] gromacs-2020 build gcc/nvcc error   Szilárd Páll
      • [gmx-users] gromacs-2020 build gcc/nvcc error   Ryan Woltz
      • [gmx-users] gromacs-2020 build gcc/nvcc error   Szilárd Páll
• [gmx-users] ERROR DURING INSTALLATION   Sakshi Arora
• [gmx-users] gmx dens charge   anupama sharma
• [gmx-users] Cell Membrane Potential   Frank Lam
  • [gmx-users] Cell Membrane Potential   Du, Yu
• [gmx-users] How to use TIP4P-ICE water model   mbhendle
  • [gmx-users] How to use TIP4P-ICE water model   Alessandra Villa
• [gmx-users] Analysis with .sh file   Riccardo Concu
  • [gmx-users] Analysis with .sh file   John Whittaker
• [gmx-users] 3D monitors   tarzan p
• [gmx-users] Analysis with .sh file   Li, Shi
• [gmx-users] Regarding rdf and number of molecules in the FSS of tetramer   Ashma Khan
• [gmx-users] Customize gromac FF for lipid parameters   Yogesh Sharma
  • [gmx-users] Customize gromac FF for lipid parameters   Justin Lemkul
• [gmx-users] constant x-y plane area for membrane simulations.   Miro Astore
  • [gmx-users] constant x-y plane area for membrane simulations.   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 189, Issue 80, 2. Re: Analysis with .sh file (Li, Shi)   ric.concu at gmail.com
• [gmx-users] High energies after alignment of trajectory   Hannah Magdalena Baumann

Last message date: Fri Jan 31 20:23:45 CET 2020
Archived on: Fri Jan 31 20:23:46 CET 2020

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