[gmx-users] Lambda Weights from Expanded Ensemble Code
Daniel Kozuch
dkozuch at princeton.edu
Thu Jan 16 04:51:57 CET 2020
Hello,
I am interested in using simulated tempering in GROMACS (2019.5) under the
expanded ensemble options. Is there a way to monitor the ensemble weights
as the simulation progresses? I think in theory they are supposed to be
printed out in the log file, but it is only printing 0, -nan, and inf:
MC-lambda information
N Temp.(K) Count G(in kT) dG(in kT)
...
36 359.105 118 -nan -nan <<
37 366.880 96 -nan -nan
38 374.852 107 -nan -nan
39 383.026 129 -nan -nan
40 391.407 166 -nan -nan
41 400.000 199 -nan 0.00000
Here are my relevant mdp settings:
simulated-tempering = yes
nstexpanded = 500
simulated-tempering-scaling = exponential
lmc-stats = metropolis-transition
lmc-move = metropolis
Any suggestions?
Best,
Dan Kozuch
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