[gmx-users] Regarding high RMSD

[Ashma Khan]

Thank you for your suggestion Alessandra Villa
I have applied all types of pbc conditions but my one peptide is diffusing
away from another peptide in case of dimer after half of the simulation
time and rmsd is coming out 100 Angstrom after that time which is very
high. Please suggest me what should I do.
-- 
Ashma Khan
Research Scholar
Department of Chemistry
AMU, Aligarh