[gmx-users] dssp 3.1.4

[Mark Abraham]

Hi,

Do check out gmx do_dssp -h and make sure your dssp binary is the right
version, with executable permissions, in the right place (or alternatively
the appropriate environment variable is set, so that do_dssp can find dssp)

Mark

On Fri, 1 May 2020 at 18:47, Iman Katouzian <imaneternity at gmail.com> wrote:

> Good day,
>
> I have recently downloaded the latest dssp version and with the mkdssp
> executable file as I type chmod +x dssp and run this code :
> gmx do_dssp -f final.xtc -s md.tpr -n index.ndx -o ss.xpm -sc scount.xvg
> -tu ns
>
> the process starts but no output is created after even 1 day !!!!
> my Gormacs version is 2019.3 and even earlier versions of dssp does not
> work and give me the same result. Till now I have tested this process on 3
> computers having GROMACS 2019.3 on them.
>
> Can someone help me with this issue?
> Many thanks.
>
> --
>
> *Iman Katouzian*
>
> *Ph.D.** candidate of Food Process Engineering*
>
> *Faculty of Food Science and Technology*
>
> *University of Agricultural Sciences and Natural Resources, Gorgan, Iran*
> --
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