[gmx-users] Size of Water Pools

Shan Jayasinghe shanjayasinghe2011 at gmail.com
Tue May 5 09:22:07 CEST 2020

Hi All,

I am simulating systems with lipids, water and surfactants. I observed
formation of water pools/water aggregates with different sizes in final
frames. Now I want to measure size of these pools. What gromacs tool do you
suggest me to use?
I tried to do clustering first and thought calculating radius of gyration.
However, clustering process takes ages to complete. Could you please help
me to determine size of these water pools?

Thank you.

Best Regards
Shan Jayasinghe

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