[gmx-users] Re: image control

[chris.neale at utoronto.ca]

Email them to me and I will post them on the internet and provide  
links to this list.

chris.neale |at| utoronto.ca


> Hi Myunggi Yi,
>
> I said link them, not mail them to me. Check your .tpr file to see 1.
> whether these parts of your lipids are already separated at the start of the
> equilibration run (you can extract the coordinates with editconf) and 2.
> whether you actually have bonds defined where you expect them to be.
>
> Cheers,
>
> Tsjerk
>
> On Jan 16, 2008 3:47 PM, Myunggi Yi <myunggi at gmail.com> wrote:
>
>> I have tried to attach my .gro file, but it is not allowed in mailing
>> list.
>> I'm attaching small file of the snap shot of the gro file.
>> The limit is 50 KB. What can I do?
>> I'm attaching the file to you (Tsjerk Wassenaar).
>> Again I didn't do any modification.  This is a just output from MD.
>> As you know you can check the coordinate in the .gro text file.
>> This is not a visulalization problem.
>> If any body wants, I will send you my .gro file.
>>
>> I downloaded popc.itp form Dr. Tieleman's web.
>>
>> As you see the lipid can be broken any bond (see two fragment of lipid at
>> the bottom),
>> however the left sile lipid are Okay.
>> Any idea?