[gmx-users] DSSP hangs for days

sharada sharada at ccmb.res.in
Mon Jun 29 11:58:44 CEST 2009


hello,
I have downloaded the tar file from the github and extracted the contents. However I am unable to understand the README file as it is in a language other than english. Could you kindly provide the instructions how to go about using it. 
thanks for the help
sharada
-- Original Message --
From: Carsten Kutzner <ckutzne at gwdg.de>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Date: Mon, 29 Jun 2009 10:28:32 +0200
Subject: Re: [gmx-users]  DSSP hangs for  days
On Jun 28, 2009, at 10:46 AM, sharada wrote:
> Hi,
>  I waited for it to finish for  almost 5 days nothing happened  
> except creation of  those files.  I had posted a similar  mail some  
> time back. Is there no solution for this.  Is it something to do  
> with speed of the system?  I ran the program on HP dual core system.
Hi,
there were a few issues in do_dssp which I fixed recently. Could you  
try the most recent
version from the git repository, maybe on a short trajectory first?
Carsten
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