[gmx-users] Failing installation with --enable-mpi option

[Bhanu]

Dear Justin, could you please write what environmental changes you
made to MPICC.. I tried to alter the profile, but it is rejecting all
of them..

Bhanu.

On 20/05/2009, Bhanu <bhanuiitr at gmail.com> wrote:
> Thanks Justin, will try your suggestion..
>
> 2009/5/20 Justin A. Lemkul <jalemkul at vt.edu>:
> >
> >
> > Bhanu wrote:
> >>
> >> I tried to install Gromacs on my Core2Quad pc with the command
> >>
> >>  ./configure --enable-mpi --disable-nice --program-suffix="_mpi"
> >>
> >> it is showing the following error result:
> >>
> >> [sandaka at bhanu gromacs-4.0.3]$ ./configure --enable-mpi --disable-nice
> >> --program
> >> -suffix="_mpi"
> >> checking build system type... i686-pc-linux-gnu
> >> checking host system type... i686-pc-linux-gnu
> >> checking for a BSD-compatible install... /usr/bin/install -c
> >> checking whether build environment is sane... yes
> >> /bin/sh: /home/sandaka/Desktop/all: No such file or directory
> >> configure: WARNING: `missing' script is too old or missing
> >> checking for a thread-safe mkdir -p... /bin/mkdir -p
> >> checking for gawk... gawk
> >> checking whether make sets $(MAKE)... yes
> >> checking how to create a ustar tar archive... gnutar
> >> checking for cc... cc
> >> checking for C compiler default output file name... a.out
> >> checking whether the C compiler works... yes
> >> checking whether we are cross compiling... no
> >> checking for suffix of executables...
> >> checking for suffix of object files... o
> >> checking whether we are using the GNU C compiler... yes
> >> checking whether cc accepts -g... yes
> >> checking for cc option to accept ISO C89... none needed
> >> checking for style of include used by make... GNU
> >> checking dependency style of cc... gcc3
> >> checking dependency style of cc... gcc3
> >> checking for mpxlc... no
> >> checking for mpicc... mpicc
> >> checking whether the MPI cc command works... yes
> >> checking for catamount... no
> >> checking how to run the C preprocessor... mpicc -E
> >> checking whether mpicc accepts -O3... yes
> >> checking whether mpicc accepts -funroll-all-loops... yes
> >> checking whether mpicc accepts  -O3 -fomit-frame-pointer
> >> -finline-functions -Wall -Wno-unused -funroll-all-loops... yes
> >> checking for grep that handles long lines and -e... /bin/grep
> >> checking for egrep... /bin/grep -E
> >> checking for ANSI C header files... no
> >> checking for sys/types.h... yes
> >> checking for sys/stat.h... yes
> >> checking for stdlib.h... yes
> >> checking for string.h... yes
> >> checking for memory.h... yes
> >> checking for strings.h... yes
> >> checking for inttypes.h... yes
> >> checking for stdint.h... yes
> >> checking for unistd.h... yes
> >> checking whether byte ordering is bigendian... no
> >> checking for int... yes
> >> checking size of int... configure: error: cannot compute sizeof (int)
> >> See `config.log' for more details.
> >>
> >> Am attaching the config.log file herein. I've Openmpi and fftw already
> >> installed and in the path.. Couldn't understand what is the error!
> >>
> >>
> >
> > Have a look at this thread:
> >
> > http://www.gromacs.org/pipermail/gmx-users/2008-November/037935.html
> >
> > -Justin
> >
> >>
> >>
> >>
> >>
> >> ------------------------------------------------------------------------
> >>
> >> _______________________________________________
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> >
> > --
> > ========================================
> >
> > Justin A. Lemkul
> > Ph.D. Candidate
> > ICTAS Doctoral Scholar
> > Department of Biochemistry
> > Virginia Tech
> > Blacksburg, VA
> > jalemkul[at]vt.edu | (540) 231-9080
> > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> >
> > ========================================
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> >
>
>
>
> --
> Never lose hope on the person you love.... they maybe the reason your
> heart aches today... but they are definitely the reason your heart
> beats.... : COPIED FROM GMAIL CUSTOM MSGS.
>


-- 
Never lose hope on the person you love.... they maybe the reason your
heart aches today... but they are definitely the reason your heart
beats.... : COPIED FROM GMAIL CUSTOM MSGS.