[gmx-users] Temperature Coupling and Coupling-Groups

[shayamra at post.tau.ac.il]

Greetings dear Gromacs users,

I would like to create a membrane-protein simulations (popc + protein,  
water, Na Cl ions, using Berendsen thermostat) and I am not sure which  
coupling-groups I should use.
For example, why not couple the whole system together?

I do realize that this is a large request on this type of mailing  
list. I will also be happy to receive references to relevant literature.

Thanks in advance,
-Shay