[gmx-users] Regarding xpm2ps
bipin singh
bipinelmat at gmail.com
Wed Aug 24 15:00:06 CEST 2011
Thanks for your kind help,
I have tried as per your suggestion, the below command
g_sham -f 2d_proj.xvg -xmin -5 -xmax 5 -ls gibbs.xpm
It is running without any error , but it is not giving any xpm output.......
On Wed, Aug 24, 2011 at 17:18, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>
> bipin singh wrote:
>>
>> Thanks for your reply,
>> I am attaching the xpm file which I got from g_sham and also attaching
>> the eps output got from
>> xpm2ps.As you can see there is no axis range(PC1 and PC2) labeled in eps
>> file.
>> As the PC1 range is from -4 to +4 and PC2 range from -5 to +4, I want
>> the x-axis range in eps file from -4 to +4(PC1)
>> and y-axis range from -5 to +4(PC2) regardless of the data values in xpm
>> file.
>> But I am unable to get using .m2p file.
>>
>
> The .m2p file can only be used to adjust axes if the data fit the range you
> want already. This was unclear from your earlier post. Now that you've
> said what program you used, we can solve this. g_sham allows you to set the
> axis manually with the -xmin and -xmax options. Re-run g_sham with these
> options to set the axes and you should have no problem.
>
> -Justin
>
>> On Wed, Aug 24, 2011 at 16:22, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>>>
>>> bipin singh wrote:
>>>>
>>>> Hello,
>>>> I am using the below .m2p file as input for xpm2ps, but not able to
>>>> get axis range label.
>>>>
>>> What axis range do you obtain? If your data do not actually span from -4
>>> to
>>> 4, there's not much you can do. I was assuming you had data that did fit
>>> this range. You also didn't say which tool produced the .xpm file; some
>>> programs can be forced to adjust the data range, but others can't.
>>>
>>> -Justin
>>>
>>>> ; Matrix options
>>>> titlefont = Helvetica ; Matrix title Postscript Font name
>>>> titlefontsize = 20.0 ; Matrix title Font size (pt)
>>>> legend = yes ; Show the legend
>>>> legendfont = Helvetica ; Legend name Postscript Font name
>>>> legendfontsize = 12.0 ; Legend name Font size (pt)
>>>> legendlabel ; Used when there is none in the .xpm
>>>> legend2label ; Id. when merging two xpm's
>>>> xbox = 0 ; x-size of a matrix element
>>>> ybox = 0 ; y-size of a matrix element
>>>> matrixspacing = 20.0 ; Space between 2 matrices
>>>> xoffset = 0.0 ; Between matrix and bounding box
>>>> yoffset = 0.0 ; Between matrix and bounding box
>>>>
>>>> ; X-axis options
>>>> x-lineat0value = no ; Draw line at matrix value==0
>>>> x-major = 4 ; Major tick spacing
>>>> x-minor = 2 ; Id. Minor ticks
>>>> x-firstmajor = 0 ; Offset for major tick
>>>> x-majorat0 = no ; Additional Major tick at first frame
>>>> x-majorticklen = 8.0 ; Length of major ticks
>>>> x-minorticklen = 4.0 ; Id. Minor ticks
>>>> x-label = ; Used when there is none in the .xpm
>>>> x-font = Helvetica ; Axis label PostScript Font
>>>> x-fontsize = 12 ; Axis label Font size (pt)
>>>> x-tickfont = Helvetica ; Tick label PostScript Font
>>>> x-tickfontsize = 8 ; Tick label Font size (pt)
>>>>
>>>> ;Y-axis options
>>>> y-lineat0value = no
>>>> y-major = 4
>>>> y-minor = 2
>>>> y-firstmajor = 0
>>>> y-majorat0 = no
>>>> y-majorticklen = 8.0
>>>> y-minorticklen = 4.0
>>>> y-label =
>>>> y-fontsize = 12
>>>> y-font = Helvetica
>>>> y-tickfontsize = 8
>>>> y-tickfont = Helvetica
>>>>
>>>> On Wed, Aug 24, 2011 at 00:52, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>>>>>
>>>>> bipin singh wrote:
>>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I have xpm matrix file, for converting this file to ps format I am
>>>>>> using
>>>>>> xpm2ps
>>>>>> e.g: xpm2ps -f file.xpm -o file.eps . But there is no axis range label
>>>>>> mentioned for x and y-axis,
>>>>>> in ps file.Please let me know how to set x and y axis range label in
>>>>>> ps
>>>>>> file.
>>>>>> for example I want to set the x and y-axis range from -4 to +4.
>>>>>>
>>>>>>
>>>>> Use an .m2p file:
>>>>>
>>>>> http://manual.gromacs.org/online/m2p.html
>>>>>
>>>>> -Justin
>>>>>
>>>>> --
>>>>> ========================================
>>>>>
>>>>> Justin A. Lemkul
>>>>> Ph.D. Candidate
>>>>> ICTAS Doctoral Scholar
>>>>> MILES-IGERT Trainee
>>>>> Department of Biochemistry
>>>>> Virginia Tech
>>>>> Blacksburg, VA
>>>>> jalemkul[at]vt.edu | (540) 231-9080
>>>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>>>>
>>>>> ========================================
>>>>> --
>>>>> gmx-users mailing list gmx-users at gromacs.org
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>>>>>
>>>>
>>>>
>>> --
>>> ========================================
>>>
>>> Justin A. Lemkul
>>> Ph.D. Candidate
>>> ICTAS Doctoral Scholar
>>> MILES-IGERT Trainee
>>> Department of Biochemistry
>>> Virginia Tech
>>> Blacksburg, VA
>>> jalemkul[at]vt.edu | (540) 231-9080
>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>>
>>> ========================================
>>> --
>>> gmx-users mailing list gmx-users at gromacs.org
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>>
>>
>>
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
> --
> gmx-users mailing list gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
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--
-----------------------
Regards,
Bipin Singh
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