[gmx-users] lipid membrane slicing

[Poojari, Chetan]

Hi,

I have protein completely inserted into lipid membrane and would like to study order parameter around the protein as well as away from the protein.

For this I would like to slice my membrane into parts.

I tried the following command:

g_order -s *.tpr -f *.xtc -n sn1.ndx -d z -od deuter_sn1.xvg -sl 2

The output i get from this is as same as the one where i dont use -sl 2 flag and it also doesnt show the different parts it has used for order parameter calculation.

Please can I know how to slice my lipid membrane so that i can study order parameter for each part separately.


Kind Regards,
chetan

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