[gmx-users] How to create topology and coordinate files for different oils

[Justin Lemkul]

On Wed, Nov 20, 2013 at 6:15 PM, Mass <masstransfer_2010 at yahoo.com> wrote:

> Dear users,
> I am wondering if anyone can help me to make the topology and coordinate
> file for different oils rather than the one in Justin biphasic tutorial?
> the link Justin provided in the toturial is not working.Are they availbale
> that I can simply download them? the oil I am looking for are as follow
>
>
Which link isn't working? If I know what's broken, I can try to find
correct links.


>
> Decane,  DPPC (dipalmitoyl-phosphatidyl choline) ; DMPC (dimyristoyl-phos-
> phatidyl choline)
>

UA (Berger) lipids are at:

http://wcm.ucalgary.ca/tieleman/downloads

If you want a different force field, there's CHARMM-GUI and whatever else
Google can find.

-Justin

-- 

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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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