[gmx-users] Ligand RMSD greater than Protein C alpha RMSD
jalemkul at vt.edu
Wed May 7 19:09:45 CEST 2014
On 5/7/14, 12:42 PM, MUSYOKA THOMMAS wrote:
> Dear Users,
> I am doing protein-ligand MD simulations and came across rather unusual
> result where the Ligand's RMSD is greater than that of the C alpha backbone
> of the protein in which it is docked into. Does this happen under usual
That depends on how you measure the RMSD, particularly with respect to what your
fitting group was.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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