May 2014 Archives by author

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Starting: Thu May 1 08:33:54 CEST 2014
Ending: Sat May 31 23:08:07 CEST 2014
Messages: 754

[gmx-users] Positive energy . sujithkakkat .
[gmx-users] Positive energy . sujithkakkat .
[gmx-users] Positive energy . sujithkakkat .
[gmx-users] High density after genbox sujithkakkat .
[gmx-users] High density after genbox sujithkakkat .
[gmx-users] RDF of solvation shell molecules sujithkakkat .
[gmx-users] RDF of solvation shell molecules sujithkakkat .
[gmx-users] Simulations in NVE ensemble with CHARMM36 ABEL Stephane 175950
[gmx-users] Simulations in NVE ensemble with CHARMM36 - update ABEL Stephane 175950
[gmx-users] trjcat finds different spacing among trajectories Mark Abraham
[gmx-users] trjcat finds different spacing among trajectories Mark Abraham
[gmx-users] tabulated potentials - cutoff Mark Abraham
[gmx-users] Langevin sd integrator: wrong average temperature Mark Abraham
[gmx-users] tabulated potentials - cutoff Mark Abraham
[gmx-users] tabulated potentials - cutoff Mark Abraham
[gmx-users] Gromacs and Lammps: energy conservation very different Mark Abraham
[gmx-users] Alcohol molecules moving from water/vacuum interface Mark Abraham
[gmx-users] Degree of hydrogen bonding Mark Abraham
[gmx-users] npt dynamics generate a lot of pdb files Mark Abraham
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Mark Abraham
[gmx-users] Why in g_mindist the default 'distace for contacts' -d is .6 Mark Abraham
[gmx-users] Conferences in 2014 Mark Abraham
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Mark Abraham
[gmx-users] g_cluster: treating identical molecules as interchangeable Mark Abraham
[gmx-users] g_cluster: treating identical molecules as interchangeable Mark Abraham
[gmx-users] Can't make links on GROMACS Mark Abraham
[gmx-users] Ion concentration of genion vs charmm-gui Mark Abraham
[gmx-users] why two GTX780ti is slower? Mark Abraham
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Mark Abraham
[gmx-users] Positive energy . Mark Abraham
[gmx-users] mdrun failed Mark Abraham
[gmx-users] Regarding calculating energy autocorrelation function Mark Abraham
[gmx-users] mdrun failed Mark Abraham
[gmx-users] PBC correction to visualize a protein-membrane structure Mark Abraham
[gmx-users] berendsen vs parrinello-rahman Mark Abraham
[gmx-users] berendsen vs parrinello-rahman Mark Abraham
[gmx-users] mdrun error Mark Abraham
[gmx-users] Questions about position restraint for charged proteins Mark Abraham
[gmx-users] mdrun error Mark Abraham
[gmx-users] Questions about position restraint for charged proteins Mark Abraham
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Mark Abraham
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Mark Abraham
[gmx-users] Combining .edr-files with eneconv Mark Abraham
[gmx-users] High density after genbox Mark Abraham
[gmx-users] High density after genbox Mark Abraham
[gmx-users] topology in local? Mark Abraham
[gmx-users] Multi-node GPU runs crashing with a fork() warning Mark Abraham
[gmx-users] Odd protein behavior in MD Mark Abraham
[gmx-users] Odd protein behavior in MD Mark Abraham
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Mark Abraham
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Mark Abraham
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Mark Abraham
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Mark Abraham
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Mark Abraham
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Mark Abraham
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Mark Abraham
[gmx-users] question about g_select Mark Abraham
[gmx-users] Fwd: related to bug 1222 Mark Abraham
[gmx-users] help please @User-specified potential functions Mark Abraham
[gmx-users] Secondary structure not visible afterconverting from .gro to .pdb Mark Abraham
[gmx-users] Secondary structure not visible afterconverting from .gro to .pdb Mark Abraham
[gmx-users] question Mark Abraham
[gmx-users] 答复: Welcome to the "gromacs.org_gmx-users" mailing list Mark Abraham
[gmx-users] question Mark Abraham
[gmx-users] help please @User-specified potential functions Mark Abraham
[gmx-users] help please @User-specified potential functions Mark Abraham
[gmx-users] g_kinetics Mark Abraham
[gmx-users] help please @User-specified potential functions Mark Abraham
[gmx-users] Non-bonded interaction Mark Abraham
[gmx-users] SPC Water Bond Lengths David Ackerman
[gmx-users] SPC Water Bond Lengths David Ackerman
[gmx-users] SPC Water Bond Lengths David Ackerman
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins David Ackerman
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins David Ackerman
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins David Ackerman
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins David Ackerman
[gmx-users] Atomic charges: RESP or AM1-BCC Alan
[gmx-users] problem of sodium topology Albert
[gmx-users] problem still there for ACE Albert
[gmx-users] problem of sodium topology Albert
[gmx-users] problem still there for ACE Albert
[gmx-users] problem still there for ACE Albert
[gmx-users] GPU for free energy calculation? Albert
[gmx-users] GPU in Ubuntu Albert
[gmx-users] GPU not found Albert
[gmx-users] GPU not found Albert
[gmx-users] GPU not found Albert
[gmx-users] why two GTX780ti is slower? Albert
[gmx-users] why two GTX780ti is slower? Albert
[gmx-users] why two GTX780ti is slower? Albert
[gmx-users] mdrun failed Albert
[gmx-users] mdrun failed Albert
[gmx-users] binding sites with MD Albert
[gmx-users] binding sites with MD Albert
[gmx-users] cgenff_charmm2gmx.py failed Albert
[gmx-users] cgenff_charmm2gmx.py failed Albert
[gmx-users] cgenff_charmm2gmx.py failed Albert
[gmx-users] angle-restaint Rasha Alqus
[gmx-users] How to create a new lipid molecule topology if I have .pdb file for a molecule? Todor Antonijevic
[gmx-users] New Molecule Topology Todor Antonijevic
[gmx-users] New Molecule Topology Todor Antonijevic
[gmx-users] I keep receiving messages that I have been unsubscribed from the mailing list. Rossen Apostolov
[gmx-users] Why does the list keep unsubscribing me? Rossen Apostolov
[gmx-users] Problem with g_hbond perl script output Jacob Babinec
[gmx-users] Temperature of protein-ligand systems Jacob Babinec
[gmx-users] Free Energy Landscape: Protein-Ligand System Jacob Babinec
[gmx-users] Testing gromacs: Thermodynamic integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh Baftizadeh
[gmx-users] Testing GROMACS: Solvation free energy tests using CGENFF Fahimeh Baftizadeh
[gmx-users] Testing GROMACS: Solvation free energy tests using CGENFF Fahimeh Baftizadeh
[gmx-users] vdw radii in g_sas Antonio Baptista
[gmx-users] Ion concentration of genion vs charmm-gui Antonio Baptista
[gmx-users] question Andrew Bostick
[gmx-users] MD simulation at pH 2 Turgay Cakmak
[gmx-users] lifetime of hydrogen bond of bulk water too large Calixte, Emvia I
[gmx-users] lifetime of hydrogen bond of bulk water too large Calixte, Emvia I
[gmx-users] MD simulation at pH 2 Dr. Vitaly Chaban
[gmx-users] Generating Glycerol parameters from propanol parameters - OPLS Dr. Vitaly Chaban
[gmx-users] CNT ROTATION Dr. Vitaly Chaban
[gmx-users] Diferent Pressure Solvent Dr. Vitaly Chaban
[gmx-users] CNT ROTATION Dr. Vitaly Chaban
[gmx-users] Diferent Pressure Solvent Dr. Vitaly Chaban
[gmx-users] CNT ROTATION Dr. Vitaly Chaban
[gmx-users] problem with pdb2gmx Chandan Choudhury
[gmx-users] Can't make links on GROMACS Chandan Choudhury
[gmx-users] water stretched apart Chandan Choudhury
[gmx-users] topology in local? Chandan Choudhury
[gmx-users] topology in local? Chandan Choudhury
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Chandan Choudhury
[gmx-users] RDF of solvation shell molecules Chandan Choudhury
[gmx-users] Gromacs for reverse transformation Chandan Choudhury
[gmx-users] Gromacs for reverse transformation Chandan Choudhury
[gmx-users] Simulating protein peptide complex Ruben Cloete
[gmx-users] angle-angle and bond-angle cross terms João T. S. Coimbra
[gmx-users] npt dynamics generate a lot of pdb files Riccardo Concu
[gmx-users] abnormal MSD values Riccardo Concu
[gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files Bogdan Costescu
[gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files Bogdan Costescu
[gmx-users] Degree of hydrogen bonding Udaya Dahal
[gmx-users] Degree of hydrogen bonding Udaya Dahal
[gmx-users] Degree of hydrogen bonding Udaya Dahal
[gmx-users] Degree of hydrogen bonding Udaya Dahal
[gmx-users] Embedded view of the users list Andrew DeYoung
[gmx-users] g_dipoles Nilesh Dhumal
[gmx-users] g_dipoles Nilesh Dhumal
[gmx-users] berendsen vs parrinello-rahman Nilesh Dhumal
[gmx-users] berendsen vs parrinello-rahman Nilesh Dhumal
[gmx-users] berendsen vs parrinello-rahman Nilesh Dhumal
[gmx-users] translational dipole moment during the simulation Nilesh Dhumal
[gmx-users] Does anyone use GROMACS for carbohydrates? Tamir Dingjan
[gmx-users] binding sites with MD Tom Dodson
[gmx-users] binding sites with MD Tom Dodson
[gmx-users] BCAM Internship Position Announcement Bruno Escribano
[gmx-users] Postdoctoral Fellowship in Energy Storage Bruno Escribano
[gmx-users] (no subject) Mahboobeh Eslami
[gmx-users] Reaction-Field for coulombtype Mahboobeh Eslami
[gmx-users] LIE method Mahboobeh Eslami
[gmx-users] LIE method Mahboobeh Eslami
[gmx-users] LIE method Mahboobeh Eslami
[gmx-users] npt dynamics generate a lot of pdb files Natalia Alveal F.
[gmx-users] npt dynamics generate a lot of pdb files Natalia Alveal F.
[gmx-users] npt dynamics generate a lot of pdb files Natalia Alveal F.
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Fahimeh
[gmx-users] 2D PMF for two ions Rebeca García Fandiño
[gmx-users] from amber to opls Rebeca García Fandiño
[gmx-users] Alcohol molecules moving from water/vacuum interface William Foskett
[gmx-users] Alcohol molecules moving from water/vacuum interface William Foskett
[gmx-users] Alcohol molecules moving from water/vacuum interface William Foskett
[gmx-users] Alcohol molecules moving from water/vacuum interface William Foskett
[gmx-users] Langevin sd integrator: wrong average temperature Andrey Frolov
[gmx-users] Langevin sd integrator: wrong average temperature Andrey Frolov
[gmx-users] Generating Glycerol parameters from propanol parameters - OPLS Andrey Frolov
[gmx-users] Empirical force fields: release new version of RED Server Dev/PyRED FyD
[gmx-users] error in running systems in parallel Balasubramani GL
[gmx-users] flat-bottomed potentials ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] CNT ROTATION ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] CNT ROTATION ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] Diferent Pressure Solvent ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] CNT ROTATION ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] Diferent Pressure Solvent ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] Diferent Pressure Solvent ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] CNT ROTATION ANDRES ADOLFO ORTEGA GUERRERO
[gmx-users] gromacs 5.0 Anders Gabrielsson
[gmx-users] counter ions in coarse grained simulations Neha Gandhi
[gmx-users] parameters for torsion potental Victor Rosas Garcia
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Vito Genna
[gmx-users] Truncated .trr file size - 20% smaller than expected Douglas Grahame
[gmx-users] possible configuration for gromacs gpu node Harry Mark Greenblatt
[gmx-users] possible configuration for gromacs gpu node Harry Mark Greenblatt
[gmx-users] possible configuration for gromacs gpu node Harry Mark Greenblatt
[gmx-users] about exchange replica with replicas 140 #ZHANG HAIPING#
[gmx-users] 答复: about exchange replica with replicas 140 #ZHANG HAIPING#
[gmx-users] 答复: 答复: about exchange replica with replicas 140 #ZHANG HAIPING#
[gmx-users] 答复: Welcome to the "gromacs.org_gmx-users" mailing list #ZHANG HAIPING#
[gmx-users] 答复: 答复: Welcome to the "gromacs.org_gmx-users" mailing list #ZHANG HAIPING#
[gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files Hardy, Adam
[gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files Hardy, Adam
[gmx-users] g_disre problem B Harish
[gmx-users] problem in using more than one molecule of a ligand in simulation Hamid Irannejad
[gmx-users] Gromacs and Lammps: energy conservation very different James
[gmx-users] Gromacs and Lammps: energy conservation very different James
[gmx-users] Gromacs and Lammps: energy conservation very different James
[gmx-users] AdResS - adress_reference_coords Christoph Junghans
[gmx-users] how to superimpose two structures of protein-ligand complex Lenin Kandasamy
[gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files Jon Kapla
[gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files Jon Kapla
[gmx-users] Regarding number of bonds to nanometer in g_polystat Singam Karthick
[gmx-users] cgenff_charmm2gmx.py failed Gurunath Katagi
[gmx-users] binding sites with MD Nidhi Katyal
[gmx-users] how to generate .top file abhijit Kayal
[gmx-users] Ion concentration of genion vs charmm-gui Ali Khan
[gmx-users] Ion concentration of genion vs charmm-gui Ali Khan
[gmx-users] Ion concentration of genion vs charmm-gui Ali Khan
[gmx-users] Ion concentration of genion vs charmm-gui Ali Khan
[gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb Ali Khan
[gmx-users] AdResS - adress_reference_coords Jakub Krajniak
[gmx-users] All-atom MD simulation of a protein at 323K and 283K Pappu Kumar
[gmx-users] 答复: about exchange replica with replicas 140 HANNIBAL LECTER
[gmx-users] Nanoparticle topology HANNIBAL LECTER
[gmx-users] (no subject) HANNIBAL LECTER
[gmx-users] Why in g_mindist the default 'distace for contacts' -d is .6 Lalit
[gmx-users] topolbuild Hossein Lanjanian
[gmx-users] gromacs 5.0 Reid Van Lehn
[gmx-users] error in running systems in parallel Justin Lemkul
[gmx-users] Units of Gibbs free energy from g_sham Justin Lemkul
[gmx-users] problem with pdb2gmx Justin Lemkul
[gmx-users] Regarding the comparison of two result Justin Lemkul
[gmx-users] problem in using more than one molecule of a ligand in simulation Justin Lemkul
[gmx-users] Protein-protein interaction energy Justin Lemkul
[gmx-users] SPC Water Bond Lengths Justin Lemkul
[gmx-users] SPC Water Bond Lengths Justin Lemkul
[gmx-users] problem of sodium topology Justin Lemkul
[gmx-users] Langevin sd integrator: wrong average temperature Justin Lemkul
[gmx-users] error message in mdrun: Check for bad contacts and/or reduce the timestep if appropriate. Justin Lemkul
[gmx-users] problem still there for ACE Justin Lemkul
[gmx-users] topolbuild error Justin Lemkul
[gmx-users] problem still there for ACE Justin Lemkul
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins Justin Lemkul
[gmx-users] topolbuild error (marzieh dehghan) Justin Lemkul
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins Justin Lemkul
[gmx-users] Choosing lipid type Justin Lemkul
[gmx-users] Capping groups Justin Lemkul
[gmx-users] npt dynamics generate a lot of pdb files Justin Lemkul
[gmx-users] npt dynamics generate a lot of pdb files Justin Lemkul
[gmx-users] Degree of hydrogen bonding Justin Lemkul
[gmx-users] Alcohol molecules moving from water/vacuum interface Justin Lemkul
[gmx-users] Can't make links on GROMACS Justin Lemkul
[gmx-users] Alcohol molecules moving from water/vacuum interface Justin Lemkul
[gmx-users] Simulations in NVE ensemble with CHARMM36 Justin Lemkul
[gmx-users] Can't make links on GROMACS Justin Lemkul
[gmx-users] Ligand RMSD greater than Protein C alpha RMSD Justin Lemkul
[gmx-users] Applying restraint onto Sodium Atoms Justin Lemkul
[gmx-users] query regarding automated topology builder and repository Justin Lemkul
[gmx-users] All-atom MD simulation of a protein at 323K and 283K Justin Lemkul
[gmx-users] Problem with g_hbond perl script output Justin Lemkul
[gmx-users] Protein preparation in Membrane simulation Justin Lemkul
[gmx-users] Degree of hydrogen bonding Justin Lemkul
[gmx-users] RMSD Justin Lemkul
[gmx-users] force field Justin Lemkul
[gmx-users] Binding energy of membrane protein to the membrane lipids Justin Lemkul
[gmx-users] Error: dangling bond at atleast one of terminals Justin Lemkul
[gmx-users] force field Justin Lemkul
[gmx-users] energy Justin Lemkul
[gmx-users] MD simulation at pH 2 Justin Lemkul
[gmx-users] energy Justin Lemkul
[gmx-users] Can't make links on GROMACS Justin Lemkul
[gmx-users] vdw radii in g_sas Justin Lemkul
[gmx-users] Truncated .trr file size - 20% smaller than expected Justin Lemkul
[gmx-users] vdw radii in g_sas Justin Lemkul
[gmx-users] gen pairs missing from vmd top Justin Lemkul
[gmx-users] Embedded view of the users list Justin Lemkul
[gmx-users] membrane protein simulation - ligand introduction Justin Lemkul
[gmx-users] shifting to older version of gromacs after NVT-NPT and before MD run Justin Lemkul
[gmx-users] crystal slab and position restraints: com option Justin Lemkul
[gmx-users] crystal slab and position restraints: com option Justin Lemkul
[gmx-users] multiple molecules of same type and .top file Justin Lemkul
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Justin Lemkul
[gmx-users] problem with NVT equilibration for membrane protein Justin Lemkul
[gmx-users] constraints Justin Lemkul
[gmx-users] constraints Justin Lemkul
[gmx-users] constraints Justin Lemkul
[gmx-users] confirm please Justin Lemkul
[gmx-users] Simulating protein peptide complex Justin Lemkul
[gmx-users] Can't make links on GROMACS Justin Lemkul
[gmx-users] Simulations in NVE ensemble with CHARMM36 - update Justin Lemkul
[gmx-users] Positive energy . Justin Lemkul
[gmx-users] Positive energy . Justin Lemkul
[gmx-users] pbc problem Justin Lemkul
[gmx-users] question Justin Lemkul
[gmx-users] Ion concentration of genion vs charmm-gui Justin Lemkul
[gmx-users] amber to gromacs conversion of LJ potential Justin Lemkul
[gmx-users] Ion concentration of genion vs charmm-gui Justin Lemkul
[gmx-users] Schlitter Configurational entropy 'NaN' Justin Lemkul
[gmx-users] PBC correction to visualize a protein-membrane structure Justin Lemkul
[gmx-users] PBC correction to visualize a protein-membrane structure Justin Lemkul
[gmx-users] berendsen vs parrinello-rahman Justin Lemkul
[gmx-users] PBC correction to visualize a protein-membrane structure Justin Lemkul
[gmx-users] Temperature of protein-ligand systems Justin Lemkul
[gmx-users] Is there ff12sb equivalent of gbsa_ff99sb.itp? Justin Lemkul
[gmx-users] mdrun error Justin Lemkul
[gmx-users] Questions about position restraint for charged proteins Justin Lemkul
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Justin Lemkul
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Justin Lemkul
[gmx-users] topology in local? Justin Lemkul
[gmx-users] topology in local? Justin Lemkul
[gmx-users] grompp Justin Lemkul
[gmx-users] Query regarding dssp plot Justin Lemkul
[gmx-users] Query regarding dssp plot Justin Lemkul
[gmx-users] topology in local? Justin Lemkul
[gmx-users] topology in local? Justin Lemkul
[gmx-users] Cannot Generate CHARMM36 Topology for POPC with Virtual Sites Justin Lemkul
[gmx-users] about exchange replica with replicas 140 Justin Lemkul
[gmx-users] from amber to opls Justin Lemkul
[gmx-users] mdrun_mpi with cmake Justin Lemkul
[gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON Justin Lemkul
[gmx-users] RDF of solvation shell molecules Justin Lemkul
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Justin Lemkul
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Justin Lemkul
[gmx-users] PBC problems?? Justin Lemkul
[gmx-users] binding sites with MD Justin Lemkul
[gmx-users] constraint error Justin Lemkul
[gmx-users] producing several trajectories to check for reproducibility Justin Lemkul
[gmx-users] Free Energy Landscape: Protein-Ligand System Justin Lemkul
[gmx-users] How to create a new lipid molecule topology if I have .pdb file for a molecule? Justin Lemkul
[gmx-users] cgenff_charmm2gmx.py failed Justin Lemkul
[gmx-users] Generating Glycerol parameters from propanol parameters - OPLS Justin Lemkul
[gmx-users] Water model properties Justin Lemkul
[gmx-users] PRODRG Justin Lemkul
[gmx-users] Backward (CG to atomistic), no charmm27 Justin Lemkul
[gmx-users] Problems with trajectories Justin Lemkul
[gmx-users] merge two .top file Justin Lemkul
[gmx-users] Error while trying to create a membrane-protein system Justin Lemkul
[gmx-users] angle-angle and bond-angle cross terms Justin Lemkul
[gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential Justin Lemkul
[gmx-users] CNT ROTATION Justin Lemkul
[gmx-users] Diferent Pressure Solvent Justin Lemkul
[gmx-users] Hydrogen bonds Justin Lemkul
[gmx-users] New Molecule Topology Justin Lemkul
[gmx-users] CNT ROTATION Justin Lemkul
[gmx-users] Secondary structure not visible after converting from .gro to .pdb Justin Lemkul
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb Justin Lemkul
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb Justin Lemkul
[gmx-users] Using Non-bonded interaction Justin Lemkul
[gmx-users] Error while trying to create a membrane-protein system Justin Lemkul
[gmx-users] New Molecule Topology Justin Lemkul
[gmx-users] CNT ROTATION Justin Lemkul
[gmx-users] Using Non-bonded interaction Justin Lemkul
[gmx-users] editonf: Center of Mass? Justin Lemkul
[gmx-users] LIE method Justin Lemkul
[gmx-users] Non-bonded interaction. Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] LIE method Justin Lemkul
[gmx-users] Reg Free enerfy calculation Justin Lemkul
[gmx-users] Non-bonded interaction Justin Lemkul
[gmx-users] help please @User-specified potential functions Josip Lovrić
[gmx-users] Gromacs 5, TNG, and older trajectory formats Magnus Lundborg
[gmx-users] refcoord-scaling Chetan Mahajan
[gmx-users] poor minimization? Chetan Mahajan
[gmx-users] water stretched apart Chetan Mahajan
[gmx-users] water stretched apart Chetan Mahajan
[gmx-users] water stretched apart Chetan Mahajan
[gmx-users] crystal slab and position restraints: com option Chetan Mahajan
[gmx-users] crystal slab and position restraints: com option Chetan Mahajan
[gmx-users] multiple molecules of same type and .top file Chetan Mahajan
[gmx-users] confirm please Chetan Mahajan
[gmx-users] confirm please Chetan Mahajan
[gmx-users] refcoord-scaling Chetan Mahajan
[gmx-users] refcoord-scaling Chetan Mahajan
[gmx-users] amber to gromacs conversion Chetan Mahajan
[gmx-users] amber to gromacs conversion of LJ potential Chetan Mahajan
[gmx-users] small questions on tabulated functions Chetan Mahajan
[gmx-users] small questions on tabulated functions Chetan Mahajan
[gmx-users] help please @User-specified potential functions Chetan Mahajan
[gmx-users] help please @User-specified potential functions Chetan Mahajan
[gmx-users] help please @User-specified potential functions Chetan Mahajan
[gmx-users] help please @User-specified potential functions Chetan Mahajan
[gmx-users] help please @User-specified potential functions Chetan Mahajan
[gmx-users] help please @User-specified potential functions Chetan Mahajan
[gmx-users] All-atom MD simulation of a protein at 323K and 283K Erik Marklund
[gmx-users] dssp installation error Erik Marklund
[gmx-users] g_cluster: treating identical molecules as interchangeable Erik Marklund
[gmx-users] Ion concentration of genion vs charmm-gui Erik Marklund
[gmx-users] Hydrogen bonds Erik Marklund
[gmx-users] Secondary structure not visible afterconverting from .gro to .pdb Erik Marklund
[gmx-users] question Erik Marklund
[gmx-users] problem with pdb2gmx Nizar Masbukhin
[gmx-users] problem with pdb2gmx Nizar Masbukhin
[gmx-users] problem with pdb2gmx Nizar Masbukhin
[gmx-users] problem with pdb2gmx Nizar Masbukhin
[gmx-users] error message in mdrun: Check for bad contacts and/or reduce the timestep if appropriate. Nizar Masbukhin
[gmx-users] g_dielectric problem Guilherme Duarte Ramos Matos
[gmx-users] Compatible GPU List Hadi Mehrabian
[gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 82 Caro Miguel
[gmx-users] problem with NVT equilibration for membrane protein Floriane Montanari
[gmx-users] need guidance Lovika Moudgil
[gmx-users] mdrun error Lovika Moudgil
[gmx-users] mdrun error Lovika Moudgil
[gmx-users] mdrun error Lovika Moudgil
[gmx-users] mdrun error Lovika Moudgil
[gmx-users] mdrun error Lovika Moudgil
[gmx-users] Need guidance Lovika Moudgil
[gmx-users] how to generate .top file Lovika Moudgil
[gmx-users] how to generate .top file Lovika Moudgil
[gmx-users] how to generate .top file Lovika Moudgil
[gmx-users] constraint error Lovika Moudgil
[gmx-users] constraint error Lovika Moudgil
[gmx-users] merge two .top file Lovika Moudgil
[gmx-users] merge two .top file Lovika Moudgil
[gmx-users] PBC correction to visualize a protein-membrane structure Juan Munoz-Garcia
[gmx-users] PBC correction to visualize a protein-membrane structure Juan Munoz-Garcia
[gmx-users] PBC correction to visualize a protein-membrane structure Juan Munoz-Garcia
[gmx-users] PBC correction to visualize a protein-membrane structure Juan Munoz-Garcia
[gmx-users] PBC correction to visualize a protein-membrane structure Juan Munoz-Garcia
[gmx-users] PBC correction to visualize a protein-membrane structure Juan Munoz-Garcia
[gmx-users] Problem inserting protein into a POPC bilayer Juan Munoz-Garcia
[gmx-users] Problem inserting protein into a POPC bilayer Juan Munoz-Garcia
[gmx-users] Positive energy . Rasoul Nasiri
[gmx-users] REMD, demux after 100 ns per replica Christopher Neale
[gmx-users] REMD, demux after 100 ns per replica Christopher Neale
[gmx-users] trjcat finds different spacing among trajectories Christopher Neale
[gmx-users] Langevin sd integrator: wrong average temperature Christopher Neale
[gmx-users] quesion about MIC Christopher Neale
[gmx-users] translational dipole moment during the simulation Christopher Neale
[gmx-users] Loop refirement using simulated annealing Christopher Neale
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb Christopher Neale
[gmx-users] Secondary structure not visible after converting from .gro to .pdb Christopher Neale
[gmx-users] gpu k20x vs k40 Andrei Neamtu
[gmx-users] gpu k20x vs k40 Andrei Neamtu
[gmx-users] Problems with trajectories Paulo Netz
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Steven Neumann
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Steven Neumann
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Steven Neumann
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Steven Neumann
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Steven Neumann
[gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled Steven Neumann
[gmx-users] Can't make links on GROMACS Ly Minh Nhat
[gmx-users] Multi-node GPU runs crashing with a fork() warning Thomas C. O'Connor
[gmx-users] Multi-node GPU runs crashing with a fork() warning Thomas C. O'Connor
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Thomas C. O'Connor
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Yu Ogawa
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Yu Ogawa
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Yu Ogawa
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Yu Ogawa
[gmx-users] md-vv run with the Nose-Hoover thermostat crashed.. Yu Ogawa
[gmx-users] Can't make links on GROMACS Ooker
[gmx-users] Can't make links on GROMACS Ooker
[gmx-users] Can't make links on GROMACS Ooker
[gmx-users] Can't make links on GROMACS Ooker
[gmx-users] Can't make links on GROMACS Ooker
[gmx-users] Which is better to make pqr files: pdb2pqr or GROMACS? Ooker
[gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 32 Andrés Ortega
[gmx-users] Query regarding dssp plot Aditya Padhi
[gmx-users] Query regarding dssp plot Aditya Padhi
[gmx-users] Query regarding dssp plot Aditya Padhi
[gmx-users] PRODRG Negar Parvizi
[gmx-users] cutoff-scheme in CPU& GPU Que Pasa
[gmx-users] genion Que Pasa
[gmx-users] question Atila Petrosian
[gmx-users] question Atila Petrosian
[gmx-users] Cannot Generate CHARMM36 Topology for POPC with Virtual Sites Prajapati, Jigneshkumar Dahyabhai
[gmx-users] Langevin sd integrator: wrong average temperature Szilárd Páll
[gmx-users] Langevin sd integrator: wrong average temperature Szilárd Páll
[gmx-users] possible configuration for gromacs gpu node Szilárd Páll
[gmx-users] possible configuration for gromacs gpu node Szilárd Páll
[gmx-users] possible configuration for gromacs gpu node Szilárd Páll
[gmx-users] Compatible GPU List Szilárd Páll
[gmx-users] GPU for free energy calculation? Szilárd Páll
[gmx-users] GPU in Ubuntu Szilárd Páll
[gmx-users] GPU in Ubuntu Szilárd Páll
[gmx-users] why two GTX780ti is slower? Szilárd Páll
[gmx-users] why two GTX780ti is slower? Szilárd Páll
[gmx-users] Multi-node GPU runs crashing with a fork() warning Szilárd Páll
[gmx-users] Multi-node GPU runs crashing with a fork() warning Szilárd Páll
[gmx-users] mdrun_mpi with cmake Szilárd Páll
[gmx-users] cutoff-scheme in CPU& GPU Szilárd Páll
[gmx-users] cutoff-scheme in CPU& GPU Szilárd Páll
[gmx-users] Fwd: related to bug 1222 Szilárd Páll
[gmx-users] REMD, demux after 100 ns per replica Andrea Pérez-Villa
[gmx-users] Compiling gromacs 4.6.5 on cray XT5m Gmx QA
[gmx-users] Compiling gromacs 4.6.5 on cray XT5m Gmx QA
[gmx-users] Combining .edr-files with eneconv Gmx QA
[gmx-users] Reference value for berger POPC area per headgroup Gmx QA
[gmx-users] query regarding automated topology builder and repository Sanchaita Rajkhowa
[gmx-users] (no subject) Meenakshi Rajput
[gmx-users] topolbuild Bruce D. Ray
[gmx-users] topolbuild error Bruce D. Ray
[gmx-users] I keep receiving messages that I have been unsubscribed from the mailing list. Bruce D. Ray
[gmx-users] Units of Gibbs free energy from g_sham Venkat Reddy
[gmx-users] Units of Gibbs free energy from g_sham Venkat Reddy
[gmx-users] counter ions in coarse grained simulations Venkat Reddy
[gmx-users] tabulated potentials - cutoff Sabine Reisser
[gmx-users] tabulated potentials - cutoff Sabine Reisser
[gmx-users] tabulated potentials - cutoff Sabine Reisser
[gmx-users] Applying restraint onto Sodium Atoms Carlos Navarrro Retamal
[gmx-users] Generating Glycerol parameters from propanol parameters - OPLS Carlos Navarrro Retamal
[gmx-users] Generating Glycerol parameters from propanol parameters - OPLS Carlos Navarrro Retamal
[gmx-users] Positive energy . Bryan Roessler
[gmx-users] Why does the list keep unsubscribing me? X Rules
[gmx-users] Why does the list keep unsubscribing me? X Rules
[gmx-users] g_cluster: treating identical molecules as interchangeable Gil Rutter
[gmx-users] trjcat finds different spacing among trajectories Giuseppina La Sala
[gmx-users] trjcat finds different spacing among trajectories Giuseppina La Sala
[gmx-users] how to select heavy atoms of Ligand Giuseppina La Sala
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins Ollila Samuli
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins Ollila Samuli
[gmx-users] TIP5P water and Test Particle Insertion Joerg Sauter
[gmx-users] TIP5P water and Test Particle Insertion Joerg Sauter
[gmx-users] Atomic charges: RESP or AM1-BCC Oliver Schillinger
[gmx-users] Odd protein behavior in MD Steve Seibold
[gmx-users] PBC problems?? Steve Seibold
[gmx-users] Problems with trajectories Steve Seibold
[gmx-users] trjconv problems Steve Seibold
[gmx-users] shifting to older version of gromacs after NVT-NPT and before MD run Saman Shahriyari
[gmx-users] producing several trajectories to check for reproducibility Saman Shahriyari
[gmx-users] Langevin sd integrator: wrong average temperature Michael Shirts
[gmx-users] Gromacs and Lammps: energy conservation very different Michael Shirts
[gmx-users] Gromacs and Lammps: energy conservation very different Michael Shirts
[gmx-users] berendsen vs parrinello-rahman Michael Shirts
[gmx-users] large free energy difference of mutating ATP to GTP in solution using FEP method in Gromacs-4.6.5 Michael Shirts
[gmx-users] large free energy difference of mutating ATP to GTP in solution using FEP method in Gromacs-4.6.5 Michael Shirts
[gmx-users] large free energy difference of mutating ATP to GTP in solution using FEP method in Gromacs-4.6.5 Michael Shirts
[gmx-users] binding sites with MD Michael Shirts
[gmx-users] binding sites with MD Michael Shirts
[gmx-users] (no subject) Dhanachandra Singh
[gmx-users] Water model properties Harshkumar Singh
[gmx-users] Water model properties Harshkumar Singh
[gmx-users] Water model properties Harshkumar Singh
[gmx-users] dielectric constant of water by gromacs Harshkumar Singh
[gmx-users] dielectric constant of water by gromacs Harshkumar Singh
[gmx-users] Is there ff12sb equivalent of gbsa_ff99sb.itp? Richard Smith
[gmx-users] Conferences in 2014 Ricardo O. S. Soares
[gmx-users] Binding energy of membrane protein to the membrane lipids Victor Sojo
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Andrea Spitaleri
[gmx-users] MMPBSA with GROMACS: a new revised tool Andrea Spitaleri
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins David van der Spoel
[gmx-users] g_dipoles David van der Spoel
[gmx-users] g_dipoles David van der Spoel
[gmx-users] Citing gromacs tools David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Schlitter Configurational entropy 'NaN' David van der Spoel
[gmx-users] Temperature of protein-ligand systems David van der Spoel
[gmx-users] entropy vs time plot David van der Spoel
[gmx-users] dielectric constant of water by gromacs David van der Spoel
[gmx-users] dielectric constant of water by gromacs David van der Spoel
[gmx-users] constraints Nicola Staffolani
[gmx-users] constraints Nicola Staffolani
[gmx-users] constraints Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] topology in local? Nicola Staffolani
[gmx-users] editconf - CoM? Nicola Staffolani
[gmx-users] editonf: Center of Mass? Nicola Staffolani
[gmx-users] editonf: Center of Mass? Nicola Staffolani
[gmx-users] editonf: Center of Mass? Nicola Staffolani
[gmx-users] Loop refirement using simulated annealing James Starlight
[gmx-users] Loop refirement using simulated annealing James Starlight
[gmx-users] (no subject) Balasubramanian Suriyanarayanan
[gmx-users] (no subject) Balasubramanian Suriyanarayanan
[gmx-users] Protein preparation in Membrane simulation Balasubramanian Suriyanarayanan
[gmx-users] Error: dangling bond at atleast one of terminals Balasubramanian Suriyanarayanan
[gmx-users] membrane protein simulation - ligand introduction Balasubramanian Suriyanarayanan
[gmx-users] topol_pope.top Balasubramanian Suriyanarayanan
[gmx-users] 回复：回复： can you Provide cardiolipin parameter file? Piggot T.
[gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins Piggot T.
[gmx-users] Reference value for berger POPC area per headgroup Piggot T.
[gmx-users] Ligand RMSD greater than Protein C alpha RMSD MUSYOKA THOMMAS
[gmx-users] rhombic dodecahedron construction Trayder Thomas
[gmx-users] rhombic dodecahedron construction Trayder Thomas
[gmx-users] grompp Urszula Uciechowska
[gmx-users] Regarding calculation of energy auto-correlation function Ravi Kumar Venkatraman
[gmx-users] Error while trying to create a membrane-protein system Spyridon Vicatos
[gmx-users] Error while trying to create a membrane-protein system Spyridon Vicatos
[gmx-users] Question regarding gromacs error of g_membed Spyros Vicatos
[gmx-users] mdrun_mpi with cmake Soren Wacker
[gmx-users] mdrun_mpi with cmake Soren Wacker
[gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON Soren Wacker
[gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON Soren Wacker
[gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON Soren Wacker
[gmx-users] PRODRG Soren Wacker
[gmx-users] GPU not found Mirco Wahab
[gmx-users] GPU not found Mirco Wahab
[gmx-users] GPU not found Mirco Wahab
[gmx-users] gpu k20x vs k40 Mirco Wahab
[gmx-users] cutoff-scheme in CPU& GPU Yorquant Wang
[gmx-users] cutoff-scheme in CPU& GPU Yorquant Wang
[gmx-users] cutoff-scheme in CPU& GPU Yorquant Wang
[gmx-users] Alcohol molecules moving from water/vacuum interface Dallas Warren
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Dallas Warren
[gmx-users] 回复： can you Provide cardiolipin parameter file? Tsjerk Wassenaar
[gmx-users] vdw radii in g_sas Tsjerk Wassenaar
[gmx-users] water stretched apart Tsjerk Wassenaar
[gmx-users] g_covar Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] entropy vs time plot Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] How to efficiently fix pbc trajectories problems for VMD using Tsjerk Wassenaar
[gmx-users] Gromacs for reverse transformation Tsjerk Wassenaar
[gmx-users] Gromacs for reverse transformation Tsjerk Wassenaar
[gmx-users] Gromacs for reverse transformation Tsjerk Wassenaar
[gmx-users] rhombic dodecahedron construction Tsjerk Wassenaar
[gmx-users] how to generate .top file Tsjerk Wassenaar
[gmx-users] how to generate .top file Tsjerk Wassenaar
[gmx-users] Gromacs for reverse transformation Tsjerk Wassenaar
[gmx-users] Gromacs for reverse transformation Tsjerk Wassenaar
[gmx-users] Backward (CG to atomistic), no charmm27 Tsjerk Wassenaar
[gmx-users] Backward (CG to atomistic), no charmm27 Tsjerk Wassenaar
[gmx-users] Secondary structure not visible afterconverting from .gro to .pdb Tsjerk Wassenaar
[gmx-users] Questions about position restraint for charged proteins Koki Yokoi
[gmx-users] Questions about position restraint for charged proteins Koki Yokoi
[gmx-users] Questions about position restraint for charged proteins Koki Yokoi
[gmx-users] Questions about position restraint for charged proteins Koki Yokoi
[gmx-users] MMPBSA with GROMACS: a new revised tool Zhi Yue
[gmx-users] calculation of the desolvation energy of a charged molecule through free energy perturbation Jin Zhang
[gmx-users] Temperature of protein-ligand systems Jin Zhang
[gmx-users] question about g_select mojdeh akhavan
[gmx-users] MMPBSA with GROMACS: a new revised tool andrea
[gmx-users] Fwd: related to bug 1222 albert ardevol
[gmx-users] Gromacs 5, TNG, and older trajectory formats bernhard
[gmx-users] energy mirko busato
[gmx-users] energy mirko busato
[gmx-users] Regarding the comparison of two result rama david
[gmx-users] Regarding the comparison of two result rama david
[gmx-users] large free energy difference of mutating ATP to GTP in solution using FEP method in Gromacs-4.6.5 dbaogen
[gmx-users] topolbuild error marzieh dehghan
[gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 12 marzieh dehghan
[gmx-users] Regarding the comparison of two result rajat desikan
[gmx-users] Regarding the comparison of two result rajat desikan
[gmx-users] vdw radii in g_sas rajat desikan
[gmx-users] vdw radii in g_sas rajat desikan
[gmx-users] vdw radii in g_sas rajat desikan
[gmx-users] vdw radii in g_sas rajat desikan
[gmx-users] Citing gromacs tools rajat desikan
[gmx-users] g_mdmat truncation distance for contacts rajat desikan
[gmx-users] Citing gromacs tools rajat desikan
[gmx-users] Problems with trajectories rajat desikan
[gmx-users] can you Provide cardiolipin parameter file? gejingming
[gmx-users] 回复： can you Provide cardiolipin parameter file? gejingming
[gmx-users] 回复： can you Provide cardiolipin parameter file? gejingming
[gmx-users] 回复：回复： can you Provide cardiolipin parameter file? gejingming
[gmx-users] 回复：回复：回复： can you Provide cardiolipin parameter file? gejingming
[gmx-users] Nanoparticle topology guhansingh
[gmx-users] Hydrogen bonds bharat gupta
[gmx-users] Secondary structure not visible after converting from .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible afterconverting from .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible afterconverting from .gro to .pdb bharat gupta
[gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb bharat gupta
[gmx-users] g_kinetics bharat gupta
[gmx-users] Fwd: g_kinetics bharat gupta
[gmx-users] g_kinetics bharat gupta
[gmx-users] Protein-protein interaction energy tarak karmakar
[gmx-users] MM-GB/SA analysis in Gromacs tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Entropy tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] Schlitter Configurational entropy 'NaN' tarak karmakar
[gmx-users] entropy vs time plot tarak karmakar
[gmx-users] entropy vs time plot tarak karmakar
[gmx-users] entropy vs time plot tarak karmakar
[gmx-users] how to superimpose two structures of protein-ligand complex ms
[gmx-users] Gromacs for reverse transformation shivangi nangia
[gmx-users] Gromacs for reverse transformation shivangi nangia
[gmx-users] Gromacs for reverse transformation shivangi nangia
[gmx-users] Gromacs for reverse transformation shivangi nangia
[gmx-users] Gromacs for reverse transformation shivangi nangia
[gmx-users] Gromacs for reverse transformation shivangi nangia
[gmx-users] Backward (CG to atomistic), no charmm27 shivangi nangia
[gmx-users] Backward (CG to atomistic), no charmm27 shivangi nangia
[gmx-users] Backward (CG to atomistic), no charmm27 shivangi nangia
[gmx-users] Backward (CG to atomistic), no charmm27 shivangi nangia
[gmx-users] g_dielectric errors for getting frequency dependent dielectric constants 550931258 at qq.com
[gmx-users] gen pairs missing from vmd top gromacs query
[gmx-users] g_anaeig -extr option gromacs query
[gmx-users] aptamer fatemeh ramezani
[gmx-users] Regarding calculating energy autocorrelation function ravikumarvenkatraman
[gmx-users] GPU in Ubuntu lloyd riggs
[gmx-users] GPU in Ubuntu lloyd riggs
[gmx-users] entropy vs time plot lloyd riggs
[gmx-users] (no subject) lloyd riggs
[gmx-users] binding sites with MD lloyd riggs
[gmx-users] New Molecule Topology lloyd riggs
[gmx-users] Regarding number of bonds to nanometer in g_polystat massimo sandal
[gmx-users] 回复： can you Provide cardiolipin parameter file? massimo sandal
[gmx-users] Questions about position restraint for charged proteins massimo sandal
[gmx-users] Reg Free enerfy calculation vidhya sankar
[gmx-users] calculating block average and error estimate by g_analyze tool in gromacs mircial at sjtu.edu.cn
[gmx-users] how to superimpose two structures of protein-ligand complex atsutoshi.okabe at takeda.com
[gmx-users] how to select heavy atoms of Ligand atsutoshi.okabe at takeda.com
[gmx-users] RMSD elham tazikeh
[gmx-users] force field elham tazikeh
[gmx-users] force field elham tazikeh
[gmx-users] protein simulation elham tazikeh
[gmx-users] dssp installation error elham tazikeh
[gmx-users] pbc problem elham tazikeh
[gmx-users] g_covar elham tazikeh
[gmx-users] genion elham tazikeh
[gmx-users] (no subject) elham tazikeh
[gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 82 munubas at yahoo.com
[gmx-users] convert Amber .frcmod file into Gromacs .itp file Ahmet yıldırım
[gmx-users] A problem about g_dielectric 来者可追
[gmx-users] 回复： g_dielectric errors for getting frequency dependent dielectric constants 来者可追
[gmx-users] quesion about MIC 纪律部长王海强
[gmx-users] quesion about MIC 纪律部长王海强
[gmx-users] quesion about MIC 纪律部长王海强
[gmx-users] Using Non-bonded interaction 라지브간디
[gmx-users] Using Non-bonded interaction 라지브간디
[gmx-users] Non-bonded interaction. 라지브간디
[gmx-users] Non-bonded interaction 라지브간디

Last message date: Sat May 31 23:08:07 CEST 2014
Archived on: Sat May 31 23:08:08 CEST 2014

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