May 2014 Archives by thread

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Starting: Thu May 1 08:33:54 CEST 2014
Ending: Sat May 31 23:08:07 CEST 2014
Messages: 754

• [gmx-users] error in running systems in parallel   Balasubramani GL
  • [gmx-users] error in running systems in parallel   Justin Lemkul
• [gmx-users] Units of Gibbs free energy from g_sham   Venkat Reddy
  • [gmx-users] Units of Gibbs free energy from g_sham   Justin Lemkul
    • [gmx-users] Units of Gibbs free energy from g_sham   Venkat Reddy
• [gmx-users] problem with pdb2gmx   Nizar Masbukhin
• [gmx-users] problem with pdb2gmx   Nizar Masbukhin
  • [gmx-users] problem with pdb2gmx   Chandan Choudhury
    • [gmx-users] problem with pdb2gmx   Nizar Masbukhin
  • [gmx-users] problem with pdb2gmx   Justin Lemkul
    • [gmx-users] problem with pdb2gmx   Nizar Masbukhin
• [gmx-users] angle-restaint   Rasha Alqus
• [gmx-users] Regarding the comparison of two result   rama david
  • [gmx-users] Regarding the comparison of two result   Justin Lemkul
    • [gmx-users] Regarding the comparison of two result   rajat desikan
      • [gmx-users] Regarding the comparison of two result   rajat desikan
      • [gmx-users] Regarding the comparison of two result   rama david
• [gmx-users] problem in using more than one molecule of a ligand in simulation   Hamid Irannejad
  • [gmx-users] problem in using more than one molecule of a ligand in simulation   Justin Lemkul
• [gmx-users] trjcat finds different spacing among trajectories   Giuseppina La Sala
  • [gmx-users] trjcat finds different spacing among trajectories   Mark Abraham
  • [gmx-users] trjcat finds different spacing among trajectories   Christopher Neale
    • [gmx-users] trjcat finds different spacing among trajectories   Giuseppina La Sala
      • [gmx-users] trjcat finds different spacing among trajectories   Mark Abraham
• [gmx-users] Protein-protein interaction energy   tarak karmakar
  • [gmx-users] Protein-protein interaction energy   Justin Lemkul
• [gmx-users] REMD, demux after 100 ns per replica   Christopher Neale
  • [gmx-users] REMD, demux after 100 ns per replica   Christopher Neale
    • [gmx-users] REMD, demux after 100 ns per replica   Andrea Pérez-Villa
• [gmx-users] parameters for torsion potental   Victor Rosas Garcia
• [gmx-users] convert Amber .frcmod file into Gromacs .itp file   Ahmet yıldırım
• [gmx-users] SPC Water Bond Lengths   David Ackerman
  • [gmx-users] SPC Water Bond Lengths   Justin Lemkul
    • [gmx-users] SPC Water Bond Lengths   David Ackerman
      • [gmx-users] SPC Water Bond Lengths   Justin Lemkul
      • [gmx-users] SPC Water Bond Lengths   David Ackerman
• [gmx-users] topolbuild   Hossein Lanjanian
  • [gmx-users] topolbuild   Bruce D. Ray
• [gmx-users] problem of sodium topology   Albert
  • [gmx-users] problem of sodium topology   Justin Lemkul
    • [gmx-users] problem of sodium topology   Albert
• [gmx-users] Langevin sd integrator: wrong average temperature   Andrey Frolov
  • [gmx-users] Langevin sd integrator: wrong average temperature   Justin Lemkul
    • [gmx-users] Langevin sd integrator: wrong average temperature   Andrey Frolov
      • [gmx-users] Langevin sd integrator: wrong average temperature   Michael Shirts
      • [gmx-users] Langevin sd integrator: wrong average temperature   Christopher Neale
      • [gmx-users] Langevin sd integrator: wrong average temperature   Mark Abraham
      • [gmx-users] Langevin sd integrator: wrong average temperature   Szilárd Páll
      • [gmx-users] Langevin sd integrator: wrong average temperature   Szilárd Páll
• [gmx-users] error message in mdrun: Check for bad contacts and/or reduce the timestep if appropriate.   Nizar Masbukhin
  • [gmx-users] error message in mdrun: Check for bad contacts and/or reduce the timestep if appropriate.   Justin Lemkul
• [gmx-users] problem still there for ACE   Albert
  • [gmx-users] problem still there for ACE   Justin Lemkul
    • [gmx-users] problem still there for ACE   Albert
      • [gmx-users] problem still there for ACE   Justin Lemkul
      • [gmx-users] problem still there for ACE   Albert
• [gmx-users] topolbuild error   marzieh dehghan
  • [gmx-users] topolbuild error   Justin Lemkul
  • [gmx-users] topolbuild error   Bruce D. Ray
• [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   David Ackerman
  • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   Justin Lemkul
    • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   David Ackerman
      • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   Justin Lemkul
  • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   Ollila Samuli
    • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   David Ackerman
      • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   Ollila Samuli
      • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   Piggot T.
      • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   David van der Spoel
      • [gmx-users] Force Field for Bilayer Simulations with Cholesterol and Proteins   David Ackerman
• [gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 12   marzieh dehghan
  • [gmx-users] topolbuild error (marzieh dehghan)   Justin Lemkul
• [gmx-users] tabulated potentials - cutoff   Sabine Reisser
  • [gmx-users] tabulated potentials - cutoff   Mark Abraham
    • [gmx-users] tabulated potentials - cutoff   Sabine Reisser
      • [gmx-users] tabulated potentials - cutoff   Mark Abraham
      • [gmx-users] tabulated potentials - cutoff   Sabine Reisser
• [gmx-users] Empirical force fields: release new version of RED Server Dev/PyRED   FyD
• [gmx-users] calculating block average and error estimate by g_analyze tool in gromacs   mircial at sjtu.edu.cn
• [gmx-users] Gromacs and Lammps: energy conservation very different   James
  • [gmx-users] Gromacs and Lammps: energy conservation very different   Michael Shirts
    • [gmx-users] Gromacs and Lammps: energy conservation very different   Mark Abraham
      • [gmx-users] Gromacs and Lammps: energy conservation very different   James
      • [gmx-users] Gromacs and Lammps: energy conservation very different   James
      • [gmx-users] Gromacs and Lammps: energy conservation very different   Michael Shirts
• [gmx-users] Alcohol molecules moving from water/vacuum interface   William Foskett
  • [gmx-users] Alcohol molecules moving from water/vacuum interface   Mark Abraham
    • [gmx-users] Alcohol molecules moving from water/vacuum interface   William Foskett
      • [gmx-users] Alcohol molecules moving from water/vacuum interface   Dallas Warren
      • [gmx-users] Alcohol molecules moving from water/vacuum interface   William Foskett
      • [gmx-users] Alcohol molecules moving from water/vacuum interface   Justin Lemkul
      • [gmx-users] Alcohol molecules moving from water/vacuum interface   William Foskett
      • [gmx-users] Alcohol molecules moving from water/vacuum interface   Justin Lemkul
• [gmx-users] Regarding number of bonds to nanometer in g_polystat   Singam Karthick
  • [gmx-users] Regarding number of bonds to nanometer in g_polystat   massimo sandal
• [gmx-users] possible configuration for gromacs gpu node   Harry Mark Greenblatt
  • [gmx-users] possible configuration for gromacs gpu node   Szilárd Páll
    • [gmx-users] possible configuration for gromacs gpu node   Harry Mark Greenblatt
      • [gmx-users] possible configuration for gromacs gpu node   Szilárd Páll
      • [gmx-users] possible configuration for gromacs gpu node   Harry Mark Greenblatt
      • [gmx-users] possible configuration for gromacs gpu node   Szilárd Páll
• [gmx-users] (no subject)   Balasubramanian Suriyanarayanan
  • [gmx-users] Choosing lipid type   Justin Lemkul
• [gmx-users] (no subject)   Balasubramanian Suriyanarayanan
  • [gmx-users] Capping groups   Justin Lemkul
• [gmx-users] gromacs 5.0   Anders Gabrielsson
  • [gmx-users] gromacs 5.0   Reid Van Lehn
• [gmx-users] g_dielectric problem   Guilherme Duarte Ramos Matos
• [gmx-users] npt dynamics generate a lot of pdb files   Natalia Alveal F.
  • [gmx-users] npt dynamics generate a lot of pdb files   Justin Lemkul
  • [gmx-users] npt dynamics generate a lot of pdb files   Riccardo Concu
    • [gmx-users] npt dynamics generate a lot of pdb files   Justin Lemkul
      • [gmx-users] npt dynamics generate a lot of pdb files   Natalia Alveal F.
      • [gmx-users] npt dynamics generate a lot of pdb files   Mark Abraham
      • [gmx-users] npt dynamics generate a lot of pdb files   Natalia Alveal F.
• [gmx-users] Degree of hydrogen bonding   Udaya Dahal
  • [gmx-users] Degree of hydrogen bonding   Justin Lemkul
    • [gmx-users] Degree of hydrogen bonding   Udaya Dahal
      • [gmx-users] Degree of hydrogen bonding   Justin Lemkul
      • [gmx-users] Degree of hydrogen bonding   Mark Abraham
      • [gmx-users] Degree of hydrogen bonding   Udaya Dahal
      • [gmx-users] Degree of hydrogen bonding   Udaya Dahal
• [gmx-users] Can't make links on GROMACS   Ooker
  • [gmx-users] Can't make links on GROMACS   Justin Lemkul
    • [gmx-users] Can't make links on GROMACS   Ooker
      • [gmx-users] Can't make links on GROMACS   Justin Lemkul
      • [gmx-users] Can't make links on GROMACS   Ooker
      • [gmx-users] Can't make links on GROMACS   Justin Lemkul
      • [gmx-users] Can't make links on GROMACS   Chandan Choudhury
    • [gmx-users] Can't make links on GROMACS   Ly Minh Nhat
      • [gmx-users] Can't make links on GROMACS   Justin Lemkul
      • [gmx-users] Can't make links on GROMACS   Ooker
      • [gmx-users] Can't make links on GROMACS   Mark Abraham
      • [gmx-users] Can't make links on GROMACS   Ooker
• [gmx-users] aptamer   fatemeh ramezani
• [gmx-users] Simulations in NVE ensemble with CHARMM36   ABEL Stephane 175950
  • [gmx-users] Simulations in NVE ensemble with CHARMM36   Justin Lemkul
• [gmx-users] Ligand RMSD greater than Protein C alpha RMSD   MUSYOKA THOMMAS
  • [gmx-users] Ligand RMSD greater than Protein C alpha RMSD   Justin Lemkul
• [gmx-users] Applying restraint onto Sodium Atoms   Carlos Navarrro Retamal
  • [gmx-users] Applying restraint onto Sodium Atoms   Justin Lemkul
• [gmx-users] calculation of the desolvation energy of a charged molecule through free energy perturbation   Jin Zhang
• [gmx-users] query regarding automated topology builder and repository   Sanchaita Rajkhowa
  • [gmx-users] query regarding automated topology builder and repository   Justin Lemkul
• [gmx-users] All-atom MD simulation of a protein at 323K and 283K   Pappu Kumar
  • [gmx-users] All-atom MD simulation of a protein at 323K and 283K   Erik Marklund
  • [gmx-users] All-atom MD simulation of a protein at 323K and 283K   Justin Lemkul
• [gmx-users] Problem with g_hbond perl script output   Jacob Babinec
  • [gmx-users] Problem with g_hbond perl script output   Justin Lemkul
• [gmx-users] Protein preparation in Membrane simulation   Balasubramanian Suriyanarayanan
  • [gmx-users] Protein preparation in Membrane simulation   Justin Lemkul
• [gmx-users] Compatible GPU List   Hadi Mehrabian
  • [gmx-users] Compatible GPU List   Szilárd Páll
• [gmx-users] RMSD   elham tazikeh
  • [gmx-users] RMSD   Justin Lemkul
• [gmx-users] force field   elham tazikeh
  • [gmx-users] force field   Justin Lemkul
• [gmx-users] Binding energy of membrane protein to the membrane lipids   Victor Sojo
  • [gmx-users] Binding energy of membrane protein to the membrane lipids   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 32   Andrés Ortega
• [gmx-users] Does anyone use GROMACS for carbohydrates?   Tamir Dingjan
• [gmx-users] force field   elham tazikeh
  • [gmx-users] force field   Justin Lemkul
• [gmx-users] can you Provide cardiolipin parameter file?   gejingming
  • [gmx-users] 回复： can you Provide cardiolipin parameter file?   gejingming
    • [gmx-users] 回复： can you Provide cardiolipin parameter file?   massimo sandal
  • [gmx-users] 回复： can you Provide cardiolipin parameter file?   gejingming
    • [gmx-users] 回复： can you Provide cardiolipin parameter file?   Tsjerk Wassenaar
• [gmx-users] 回复： 回复： can you Provide cardiolipin parameter file?   gejingming
  • [gmx-users] 回复： 回复： can you Provide cardiolipin parameter file?   Piggot T.
    • [gmx-users] 回复： 回复： 回复： can you Provide cardiolipin parameter file?   gejingming
• [gmx-users] protein simulation   elham tazikeh
• [gmx-users] Error: dangling bond at atleast one of terminals   Balasubramanian Suriyanarayanan
  • [gmx-users] Error: dangling bond at atleast one of terminals   Justin Lemkul
• [gmx-users] energy   mirko busato
  • [gmx-users] energy   Justin Lemkul
    • [gmx-users] energy   mirko busato
      • [gmx-users] energy   Justin Lemkul
• [gmx-users] MD simulation at pH 2   Turgay Cakmak
  • [gmx-users] MD simulation at pH 2   Dr. Vitaly Chaban
  • [gmx-users] MD simulation at pH 2   Justin Lemkul
• [gmx-users] vdw radii in g_sas   rajat desikan
  • [gmx-users] vdw radii in g_sas   Justin Lemkul
    • [gmx-users] vdw radii in g_sas   rajat desikan
      • [gmx-users] vdw radii in g_sas   Justin Lemkul
      • [gmx-users] vdw radii in g_sas   Tsjerk Wassenaar
      • [gmx-users] vdw radii in g_sas   Antonio Baptista
      • [gmx-users] vdw radii in g_sas   rajat desikan
      • [gmx-users] vdw radii in g_sas   rajat desikan
• [gmx-users] Truncated .trr file size - 20% smaller than expected   Douglas Grahame
  • [gmx-users] Truncated .trr file size - 20% smaller than expected   Justin Lemkul
• [gmx-users] gen pairs missing from vmd top   gromacs query
  • [gmx-users] gen pairs missing from vmd top   Justin Lemkul
• [gmx-users] membrane protein simulation - ligand introduction   Balasubramanian Suriyanarayanan
  • [gmx-users] membrane protein simulation - ligand introduction   Justin Lemkul
• [gmx-users] GPU for free energy calculation?   Albert
  • [gmx-users] GPU for free energy calculation?   Szilárd Páll
    • [gmx-users] GPU in Ubuntu   lloyd riggs
      • [gmx-users] GPU in Ubuntu   Albert
      • [gmx-users] GPU in Ubuntu   Szilárd Páll
      • [gmx-users] GPU in Ubuntu   lloyd riggs
      • [gmx-users] GPU in Ubuntu   Szilárd Páll
• [gmx-users] Conferences in 2014   Ricardo O. S. Soares
  • [gmx-users] Conferences in 2014   Mark Abraham
• [gmx-users] Embedded view of the users list   Andrew DeYoung
  • [gmx-users] Embedded view of the users list   Justin Lemkul
• [gmx-users] dssp installation error   elham tazikeh
  • [gmx-users] dssp installation error   Erik Marklund
• [gmx-users] refcoord-scaling   Chetan Mahajan
• [gmx-users] poor minimization?   Chetan Mahajan
• [gmx-users] g_dipoles   Nilesh Dhumal
  • [gmx-users] g_dipoles   David van der Spoel
    • [gmx-users] g_dipoles   Nilesh Dhumal
      • [gmx-users] g_dipoles   David van der Spoel
• [gmx-users] water stretched apart   Chetan Mahajan
  • [gmx-users] water stretched apart   Tsjerk Wassenaar
    • [gmx-users] water stretched apart   Chetan Mahajan
      • [gmx-users] water stretched apart   Chandan Choudhury
      • [gmx-users] water stretched apart   Chetan Mahajan
• [gmx-users] shifting to older version of gromacs after NVT-NPT and before MD run   Saman Shahriyari
  • [gmx-users] shifting to older version of gromacs after NVT-NPT and before MD run   Justin Lemkul
• [gmx-users] crystal slab and position restraints: com option   Chetan Mahajan
  • [gmx-users] crystal slab and position restraints: com option   Justin Lemkul
    • [gmx-users] crystal slab and position restraints: com option   Chetan Mahajan
      • [gmx-users] crystal slab and position restraints: com option   Justin Lemkul
• [gmx-users] g_anaeig -extr option   gromacs query
• [gmx-users] quesion about MIC   纪律部长 王海强
• [gmx-users] multiple molecules of same type and .top file   Chetan Mahajan
  • [gmx-users] multiple molecules of same type and .top file   Justin Lemkul
• [gmx-users] quesion about MIC   纪律部长 王海强
• [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Steven Neumann
  • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Justin Lemkul
    • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Steven Neumann
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Steven Neumann
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Mark Abraham
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Steven Neumann
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Mark Abraham
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Steven Neumann
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Mark Abraham
      • [gmx-users] REMD - step 12005: Water molecule starting at atom 7030 can not be settled   Steven Neumann
• [gmx-users] MM-GB/SA analysis in Gromacs   tarak karmakar
• [gmx-users] problem with NVT equilibration for membrane protein   Floriane Montanari
  • [gmx-users] problem with NVT equilibration for membrane protein   Justin Lemkul
• [gmx-users] constraints   Nicola Staffolani
  • [gmx-users] constraints   Justin Lemkul
    • [gmx-users] constraints   Nicola Staffolani
      • [gmx-users] constraints   Justin Lemkul
      • [gmx-users] constraints   Nicola Staffolani
      • [gmx-users] constraints   Justin Lemkul
• [gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files   Hardy, Adam
  • [gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files   Bogdan Costescu
  • [gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files   Jon Kapla
    • [gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files   Hardy, Adam
      • [gmx-users] gen-pairs, nrexcl and [ pairs ] in itp files   Jon Kapla
• [gmx-users] 2D PMF for two ions   Rebeca García Fandiño
• [gmx-users] I keep receiving messages that I have been unsubscribed from the mailing list.   Bruce D. Ray
  • [gmx-users] I keep receiving messages that I have been unsubscribed from the mailing list.   Rossen Apostolov
• [gmx-users] Gromacs 5, TNG, and older trajectory formats   bernhard
  • [gmx-users] Gromacs 5, TNG, and older trajectory formats   Magnus Lundborg
• [gmx-users] Why in g_mindist the default 'distace for contacts' -d is .6   Lalit
  • [gmx-users] Why in g_mindist the default 'distace for contacts' -d is .6   Mark Abraham
• [gmx-users] confirm please   Chetan Mahajan
  • [gmx-users] confirm please   Chetan Mahajan
  • [gmx-users] confirm please   Justin Lemkul
• [gmx-users] refcoord-scaling   Chetan Mahajan
• [gmx-users] Citing gromacs tools   rajat desikan
  • [gmx-users] Citing gromacs tools   David van der Spoel
    • [gmx-users] Citing gromacs tools   rajat desikan
• [gmx-users] refcoord-scaling   Chetan Mahajan
• [gmx-users] g_mdmat truncation distance for contacts   rajat desikan
• [gmx-users] Compiling gromacs 4.6.5 on cray XT5m   Gmx QA
  • [gmx-users] Compiling gromacs 4.6.5 on cray XT5m   Gmx QA
• [gmx-users] topol_pope.top   Balasubramanian Suriyanarayanan
• [gmx-users] Regarding calculation of energy auto-correlation function   Ravi Kumar Venkatraman
• [gmx-users] Simulating protein peptide complex   Ruben Cloete
  • [gmx-users] Simulating protein peptide complex   Justin Lemkul
• [gmx-users] GPU not found   Albert
  • [gmx-users] GPU not found   Mirco Wahab
    • [gmx-users] GPU not found   Albert
      • [gmx-users] GPU not found   Mirco Wahab
    • [gmx-users] GPU not found   Albert
      • [gmx-users] GPU not found   Mirco Wahab
• [gmx-users] g_cluster: treating identical molecules as interchangeable   Gil Rutter
  • [gmx-users] g_cluster: treating identical molecules as interchangeable   Mark Abraham
    • [gmx-users] g_cluster: treating identical molecules as interchangeable   Erik Marklund
• [gmx-users] Positive energy .   sujithkakkat .
  • [gmx-users] Positive energy .   Bryan Roessler
    • [gmx-users] Positive energy .   Rasoul Nasiri
      • [gmx-users] Positive energy .   Justin Lemkul
      • [gmx-users] Positive energy .   sujithkakkat .
      • [gmx-users] Positive energy .   Justin Lemkul
      • [gmx-users] Positive energy .   sujithkakkat .
      • [gmx-users] Positive energy .   Mark Abraham
• [gmx-users] Simulations in NVE ensemble with CHARMM36 - update   ABEL Stephane 175950
  • [gmx-users] Simulations in NVE ensemble with CHARMM36 - update   Justin Lemkul
• [gmx-users] Ion concentration of genion vs charmm-gui   Ali Khan
  • [gmx-users] Ion concentration of genion vs charmm-gui   Mark Abraham
    • [gmx-users] Ion concentration of genion vs charmm-gui   Antonio Baptista
    • [gmx-users] Ion concentration of genion vs charmm-gui   Ali Khan
      • [gmx-users] Ion concentration of genion vs charmm-gui   Erik Marklund
      • [gmx-users] Ion concentration of genion vs charmm-gui   Ali Khan
      • [gmx-users] Ion concentration of genion vs charmm-gui   Justin Lemkul
      • [gmx-users] Ion concentration of genion vs charmm-gui   Ali Khan
      • [gmx-users] Ion concentration of genion vs charmm-gui   Justin Lemkul
• [gmx-users] quesion about MIC   纪律部长 王海强
  • [gmx-users] quesion about MIC   Christopher Neale
• [gmx-users] why two GTX780ti is slower?   Albert
  • [gmx-users] why two GTX780ti is slower?   Mark Abraham
    • [gmx-users] why two GTX780ti is slower?   Albert
      • [gmx-users] why two GTX780ti is slower?   Szilárd Páll
      • [gmx-users] why two GTX780ti is slower?   Albert
      • [gmx-users] why two GTX780ti is slower?   Szilárd Páll
• [gmx-users] Why does the list keep unsubscribing me?   X Rules
  • [gmx-users] Why does the list keep unsubscribing me?   Rossen Apostolov
    • [gmx-users] Why does the list keep unsubscribing me?   X Rules
• [gmx-users] TIP5P water and Test Particle Insertion   Joerg Sauter
  • [gmx-users] TIP5P water and Test Particle Insertion   Joerg Sauter
• [gmx-users] pbc problem   elham tazikeh
  • [gmx-users] pbc problem   Justin Lemkul
• [gmx-users] question   Andrew Bostick
  • [gmx-users] question   Justin Lemkul
• [gmx-users] amber to gromacs conversion   Chetan Mahajan
• [gmx-users] amber to gromacs conversion of LJ potential   Chetan Mahajan
  • [gmx-users] amber to gromacs conversion of LJ potential   Justin Lemkul
• [gmx-users] flat-bottomed potentials   ANDRES ADOLFO ORTEGA GUERRERO
• [gmx-users] Regarding calculating energy autocorrelation function   ravikumarvenkatraman
  • [gmx-users] Regarding calculating energy autocorrelation function   Mark Abraham
• [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
  • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
    • [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
      • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
• [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
  • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
    • [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
      • [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
      • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
      • [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
      • [gmx-users] Schlitter Configurational entropy 'NaN'   Justin Lemkul
      • [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
      • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
      • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
      • [gmx-users] Schlitter Configurational entropy 'NaN'   tarak karmakar
      • [gmx-users] Schlitter Configurational entropy 'NaN'   David van der Spoel
• [gmx-users] abnormal MSD values   Riccardo Concu
• [gmx-users] Entropy   tarak karmakar
• [gmx-users] mdrun failed   Albert
  • [gmx-users] mdrun failed   Mark Abraham
    • [gmx-users] mdrun failed   Albert
      • [gmx-users] mdrun failed   Mark Abraham
• [gmx-users] need guidance   Lovika Moudgil
• [gmx-users] PBC correction to visualize a protein-membrane structure   Juan Munoz-Garcia
  • [gmx-users] PBC correction to visualize a protein-membrane structure   Justin Lemkul
• [gmx-users] PBC correction to visualize a protein-membrane structure   Juan Munoz-Garcia
• [gmx-users] PBC correction to visualize a protein-membrane structure   Juan Munoz-Garcia
  • [gmx-users] PBC correction to visualize a protein-membrane structure   Justin Lemkul
  • [gmx-users] PBC correction to visualize a protein-membrane structure   Juan Munoz-Garcia
    • [gmx-users] PBC correction to visualize a protein-membrane structure   Mark Abraham
• [gmx-users] berendsen vs parrinello-rahman   Nilesh Dhumal
  • [gmx-users] berendsen vs parrinello-rahman   Justin Lemkul
    • [gmx-users] berendsen vs parrinello-rahman   Nilesh Dhumal
      • [gmx-users] berendsen vs parrinello-rahman   Mark Abraham
      • [gmx-users] berendsen vs parrinello-rahman   Nilesh Dhumal
      • [gmx-users] berendsen vs parrinello-rahman   Michael Shirts
      • [gmx-users] berendsen vs parrinello-rahman   Mark Abraham
      • [gmx-users] translational dipole moment during the simulation   Nilesh Dhumal
      • [gmx-users] translational dipole moment during the simulation   Christopher Neale
• [gmx-users] Questions about position restraint for charged proteins   Koki Yokoi
  • [gmx-users] Questions about position restraint for charged proteins   Mark Abraham
• [gmx-users] mdrun error   Lovika Moudgil
  • [gmx-users] mdrun error   Mark Abraham
    • [gmx-users] mdrun error   Lovika Moudgil
      • [gmx-users] mdrun error   Mark Abraham
      • [gmx-users] mdrun error   Lovika Moudgil
      • [gmx-users] mdrun error   Lovika Moudgil
      • [gmx-users] mdrun error   Justin Lemkul
      • [gmx-users] mdrun error   Lovika Moudgil
• [gmx-users] PBC correction to visualize a protein-membrane structure   Juan Munoz-Garcia
  • [gmx-users] PBC correction to visualize a protein-membrane structure   Justin Lemkul
• [gmx-users] Temperature of protein-ligand systems   Jacob Babinec
  • [gmx-users] Temperature of protein-ligand systems   David van der Spoel
• [gmx-users] Which is better to make pqr files: pdb2pqr or GROMACS?   Ooker
• [gmx-users] Temperature of protein-ligand systems   Jin Zhang
• [gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 82   munubas at yahoo.com
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 121, Issue 82   Caro Miguel
  • [gmx-users] Temperature of protein-ligand systems   Justin Lemkul
• [gmx-users] Questions about position restraint for charged proteins   Koki Yokoi
  • [gmx-users] Questions about position restraint for charged proteins   Mark Abraham
  • [gmx-users] Questions about position restraint for charged proteins   massimo sandal
• [gmx-users] Atomic charges: RESP or AM1-BCC   Oliver Schillinger
  • [gmx-users] Atomic charges: RESP or AM1-BCC   Alan
• [gmx-users] g_covar   elham tazikeh
  • [gmx-users] g_covar   Tsjerk Wassenaar
• [gmx-users] PBC correction to visualize a protein-membrane structure   Juan Munoz-Garcia
• [gmx-users] how to superimpose two structures of protein-ligand complex   atsutoshi.okabe at takeda.com
  • [gmx-users] how to superimpose two structures of protein-ligand complex   Lenin Kandasamy
  • [gmx-users] how to superimpose two structures of protein-ligand complex   ms
• [gmx-users] Is there ff12sb equivalent of gbsa_ff99sb.itp?   Richard Smith
  • [gmx-users] Is there ff12sb equivalent of gbsa_ff99sb.itp?   Justin Lemkul
• [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
  • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Mark Abraham
    • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Mark Abraham
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Justin Lemkul
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Justin Lemkul
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Chandan Choudhury
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Dallas Warren
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Tsjerk Wassenaar
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Andrea Spitaleri
      • [gmx-users] How to efficiently fix pbc trajectories problems for VMD using   Vito Genna
• [gmx-users] AdResS - adress_reference_coords   Jakub Krajniak
• [gmx-users] lifetime of hydrogen bond of bulk water too large   Calixte, Emvia I
• [gmx-users] Questions about position restraint for charged proteins   Koki Yokoi
• [gmx-users] Questions about position restraint for charged proteins   Koki Yokoi
  • [gmx-users] Questions about position restraint for charged proteins   Justin Lemkul
• [gmx-users] AdResS - adress_reference_coords   Christoph Junghans
• [gmx-users] Combining .edr-files with eneconv   Gmx QA
  • [gmx-users] Combining .edr-files with eneconv   Mark Abraham
• [gmx-users] gpu k20x vs k40   Andrei Neamtu
  • [gmx-users] gpu k20x vs k40   Mirco Wahab
    • [gmx-users] gpu k20x vs k40   Andrei Neamtu
• [gmx-users] entropy vs time plot   tarak karmakar
  • [gmx-users] entropy vs time plot   Tsjerk Wassenaar
    • [gmx-users] entropy vs time plot   tarak karmakar
      • [gmx-users] entropy vs time plot   David van der Spoel
      • [gmx-users] entropy vs time plot   tarak karmakar
      • [gmx-users] entropy vs time plot   lloyd riggs
• [gmx-users] High density after genbox   sujithkakkat .
  • [gmx-users] High density after genbox   Mark Abraham
    • [gmx-users] High density after genbox   sujithkakkat .
      • [gmx-users] High density after genbox   Mark Abraham
• [gmx-users] Reference value for berger POPC area per headgroup   Gmx QA
  • [gmx-users] Reference value for berger POPC area per headgroup   Piggot T.
• [gmx-users] how to select heavy atoms of Ligand   atsutoshi.okabe at takeda.com
  • [gmx-users] how to select heavy atoms of Ligand   Giuseppina La Sala
• [gmx-users] Need guidance   Lovika Moudgil
• [gmx-users] (no subject)   Meenakshi Rajput
  • [gmx-users] (no subject)   HANNIBAL LECTER
• [gmx-users] topology in local?   Nicola Staffolani
  • [gmx-users] topology in local?   Chandan Choudhury
    • [gmx-users] topology in local?   Nicola Staffolani
      • [gmx-users] topology in local?   Chandan Choudhury
      • [gmx-users] topology in local?   Nicola Staffolani
      • [gmx-users] topology in local?   Justin Lemkul
      • [gmx-users] topology in local?   Nicola Staffolani
      • [gmx-users] topology in local?   Justin Lemkul
      • [gmx-users] topology in local?   Nicola Staffolani
      • [gmx-users] topology in local?   Nicola Staffolani
      • [gmx-users] topology in local?   Justin Lemkul
  • [gmx-users] topology in local?   Justin Lemkul
    • [gmx-users] topology in local?   Nicola Staffolani
    • [gmx-users] topology in local?   Mark Abraham
• [gmx-users] grompp   Urszula Uciechowska
  • [gmx-users] grompp   Justin Lemkul
• [gmx-users] Query regarding dssp plot   Aditya Padhi
  • [gmx-users] Query regarding dssp plot   Justin Lemkul
    • [gmx-users] Query regarding dssp plot   Aditya Padhi
      • [gmx-users] Query regarding dssp plot   Justin Lemkul
      • [gmx-users] Query regarding dssp plot   Aditya Padhi
• [gmx-users] Cannot Generate CHARMM36 Topology for POPC with Virtual Sites   Prajapati, Jigneshkumar Dahyabhai
  • [gmx-users] Cannot Generate CHARMM36 Topology for POPC with Virtual Sites   Justin Lemkul
• [gmx-users] Multi-node GPU runs crashing with a fork() warning   Thomas C. O'Connor
  • [gmx-users] Multi-node GPU runs crashing with a fork() warning   Szilárd Páll
    • [gmx-users] Multi-node GPU runs crashing with a fork() warning   Thomas C. O'Connor
      • [gmx-users] Multi-node GPU runs crashing with a fork() warning   Mark Abraham
      • [gmx-users] Multi-node GPU runs crashing with a fork() warning   Szilárd Páll
• [gmx-users] Nanoparticle topology   guhansingh
  • [gmx-users] Nanoparticle topology   HANNIBAL LECTER
• [gmx-users] about exchange replica with replicas 140   #ZHANG HAIPING#
  • [gmx-users] about exchange replica with replicas 140   Justin Lemkul
    • [gmx-users] 答复: about exchange replica with replicas 140   #ZHANG HAIPING#
      • [gmx-users] 答复: about exchange replica with replicas 140   HANNIBAL LECTER
      • [gmx-users] 答复: 答复: about exchange replica with replicas 140   #ZHANG HAIPING#
• [gmx-users] lifetime of hydrogen bond of bulk water too large   Calixte, Emvia I
• [gmx-users] Gromacs for reverse transformation   shivangi nangia
  • [gmx-users] Gromacs for reverse transformation   Tsjerk Wassenaar
    • [gmx-users] Gromacs for reverse transformation   Chandan Choudhury
      • [gmx-users] Gromacs for reverse transformation   Tsjerk Wassenaar
      • [gmx-users] Gromacs for reverse transformation   shivangi nangia
      • [gmx-users] Gromacs for reverse transformation   Tsjerk Wassenaar
      • [gmx-users] Gromacs for reverse transformation   Chandan Choudhury
      • [gmx-users] Gromacs for reverse transformation   shivangi nangia
      • [gmx-users] Gromacs for reverse transformation   Tsjerk Wassenaar
      • [gmx-users] Gromacs for reverse transformation   shivangi nangia
      • [gmx-users] Gromacs for reverse transformation   Tsjerk Wassenaar
      • [gmx-users] Gromacs for reverse transformation   shivangi nangia
    • [gmx-users] Gromacs for reverse transformation   shivangi nangia
• [gmx-users] RDF of solvation shell molecules   sujithkakkat .
  • [gmx-users] RDF of solvation shell molecules   Chandan Choudhury
    • [gmx-users] RDF of solvation shell molecules   sujithkakkat .
      • [gmx-users] RDF of solvation shell molecules   Justin Lemkul
• [gmx-users] BCAM Internship Position Announcement   Bruno Escribano
• [gmx-users] Postdoctoral Fellowship in Energy Storage   Bruno Escribano
• [gmx-users] Odd protein behavior in MD   Steve Seibold
  • [gmx-users] Odd protein behavior in MD   Mark Abraham
• [gmx-users] g_disre problem   B Harish
• [gmx-users] from amber to opls   Rebeca García Fandiño
  • [gmx-users] from amber to opls   Justin Lemkul
• [gmx-users] mdrun_mpi with cmake   Soren Wacker
  • [gmx-users] mdrun_mpi with cmake   Szilárd Páll
    • [gmx-users] mdrun_mpi with cmake   Soren Wacker
      • [gmx-users] mdrun_mpi with cmake   Justin Lemkul
• [gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON   Soren Wacker
  • [gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON   Justin Lemkul
    • [gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON   Soren Wacker
  • [gmx-users] mdrun_mpi with cmake with GMX_BUILD_MDRUN_ONLY=ON   Soren Wacker
• [gmx-users] counter ions in coarse grained simulations   Neha Gandhi
  • [gmx-users] counter ions in coarse grained simulations   Venkat Reddy
• [gmx-users] rhombic dodecahedron construction   Trayder Thomas
  • [gmx-users] rhombic dodecahedron construction   Tsjerk Wassenaar
    • [gmx-users] rhombic dodecahedron construction   Trayder Thomas
• [gmx-users] how to generate .top file   Lovika Moudgil
  • [gmx-users] how to generate .top file   abhijit Kayal
  • [gmx-users] how to generate .top file   Tsjerk Wassenaar
    • [gmx-users] how to generate .top file   Lovika Moudgil
      • [gmx-users] how to generate .top file   Tsjerk Wassenaar
      • [gmx-users] how to generate .top file   Lovika Moudgil
• [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Yu Ogawa
  • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Mark Abraham
    • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Yu Ogawa
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Mark Abraham
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Yu Ogawa
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Justin Lemkul
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Yu Ogawa
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Justin Lemkul
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Yu Ogawa
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Thomas C. O'Connor
      • [gmx-users] md-vv run with the Nose-Hoover thermostat crashed..   Mark Abraham
• [gmx-users] genion   elham tazikeh
  • [gmx-users] genion   Que Pasa
• [gmx-users] Question regarding gromacs error of g_membed   Spyros Vicatos
• [gmx-users] PBC problems??   Steve Seibold
  • [gmx-users] PBC problems??   Justin Lemkul
• [gmx-users] large free energy difference of mutating ATP to GTP in solution using FEP method in Gromacs-4.6.5   dbaogen
  • [gmx-users] large free energy difference of mutating ATP to GTP in solution using FEP method in Gromacs-4.6.5   Michael Shirts
• [gmx-users] cutoff-scheme in CPU& GPU   Yorquant Wang
• [gmx-users] cutoff-sch​eme in CPU& GPU   Yorquant Wang
  • [gmx-users] cutoff-sch​eme in CPU& GPU   Que Pasa
    • [gmx-users] cutoff-sch​eme in CPU& GPU   Szilárd Páll
  • [gmx-users] cutoff-sch​eme in CPU& GPU   Szilárd Páll
• [gmx-users] constraint error   Lovika Moudgil
  • [gmx-users] constraint error   Justin Lemkul
    • [gmx-users] constraint error   Lovika Moudgil
• [gmx-users] binding sites with MD   Nidhi Katyal
  • [gmx-users] binding sites with MD   Justin Lemkul
  • [gmx-users] binding sites with MD   Michael Shirts
  • [gmx-users] binding sites with MD   lloyd riggs
• [gmx-users] cutoff-sch​eme in CPU& GPU   Yorquant Wang
• [gmx-users] binding sites with MD   Tom Dodson
  • [gmx-users] binding sites with MD   Albert
    • [gmx-users] binding sites with MD   Michael Shirts
      • [gmx-users] binding sites with MD   Albert
      • [gmx-users] (no subject)   lloyd riggs
• [gmx-users] How to create a new lipid molecule topology if I have .pdb file for a molecule?   Todor Antonijevic
  • [gmx-users] How to create a new lipid molecule topology if I have .pdb file for a molecule?   Justin Lemkul
• [gmx-users] Free Energy Landscape: Protein-Ligand System   Jacob Babinec
  • [gmx-users] Free Energy Landscape: Protein-Ligand System   Justin Lemkul
• [gmx-users] producing several trajectories to check for reproducibility   Saman Shahriyari
  • [gmx-users] producing several trajectories to check for reproducibility   Justin Lemkul
• [gmx-users] Generating Glycerol parameters from propanol parameters - OPLS   Carlos Navarrro Retamal
  • [gmx-users] Generating Glycerol parameters from propanol parameters - OPLS   Dr. Vitaly Chaban
    • [gmx-users] Generating Glycerol parameters from propanol parameters - OPLS   Carlos Navarrro Retamal
      • [gmx-users] Generating Glycerol parameters from propanol parameters - OPLS   Justin Lemkul
• [gmx-users] binding sites with MD   Tom Dodson
• [gmx-users] cgenff_charmm2gmx.py failed   Albert
  • [gmx-users] cgenff_charmm2gmx.py failed   Justin Lemkul
  • [gmx-users] cgenff_charmm2gmx.py failed   Gurunath Katagi
    • [gmx-users] cgenff_charmm2gmx.py failed   Albert
• [gmx-users] MMPBSA with GROMACS: a new revised tool   andrea
  • [gmx-users] MMPBSA with GROMACS: a new revised tool   Zhi Yue
    • [gmx-users] MMPBSA with GROMACS: a new revised tool   Andrea Spitaleri
• [gmx-users] Water model properties   Harshkumar Singh
  • [gmx-users] Water model properties   Justin Lemkul
    • [gmx-users] Water model properties   Harshkumar Singh
      • [gmx-users] Water model properties   Harshkumar Singh
• [gmx-users] Generating Glycerol parameters from propanol parameters - OPLS   Andrey Frolov
• [gmx-users] Problem inserting protein into a POPC bilayer   Juan Munoz-Garcia
• [gmx-users] Problem inserting protein into a POPC bilayer   Juan Munoz-Garcia
• [gmx-users] cgenff_charmm2gmx.py failed   Albert
• [gmx-users] PRODRG   Negar Parvizi
  • [gmx-users] PRODRG   Soren Wacker
  • [gmx-users] PRODRG   Justin Lemkul
• [gmx-users] Backward (CG to atomistic), no charmm27   shivangi nangia
  • [gmx-users] Backward (CG to atomistic), no charmm27   Justin Lemkul
  • [gmx-users] Backward (CG to atomistic), no charmm27   Tsjerk Wassenaar
    • [gmx-users] Backward (CG to atomistic), no charmm27   shivangi nangia
      • [gmx-users] Backward (CG to atomistic), no charmm27   shivangi nangia
      • [gmx-users] Backward (CG to atomistic), no charmm27   shivangi nangia
      • [gmx-users] Backward (CG to atomistic), no charmm27   Tsjerk Wassenaar
• [gmx-users] CNT ROTATION   ANDRES ADOLFO ORTEGA GUERRERO
  • [gmx-users] CNT ROTATION   Dr. Vitaly Chaban
• [gmx-users] Problems with trajectories   Steve Seibold
  • [gmx-users] Problems with trajectories   rajat desikan
  • [gmx-users] Problems with trajectories   Justin Lemkul
  • [gmx-users] Problems with trajectories   Paulo Netz
• [gmx-users] Testing gromacs: Thermodynamic integration using tabulated potential   Fahimeh Baftizadeh
• [gmx-users] small questions on tabulated functions   Chetan Mahajan
  • [gmx-users] small questions on tabulated functions   Chetan Mahajan
• [gmx-users] Error while trying to create a membrane-protein system   Spyridon Vicatos
  • [gmx-users] Error while trying to create a membrane-protein system   Justin Lemkul
    • [gmx-users] Error while trying to create a membrane-protein system   Spyridon Vicatos
      • [gmx-users] Error while trying to create a membrane-protein system   Justin Lemkul
• [gmx-users] merge two .top file   Lovika Moudgil
  • [gmx-users] merge two .top file   Justin Lemkul
    • [gmx-users] merge two .top file   Lovika Moudgil
• [gmx-users] (no subject)   Mahboobeh Eslami
  • [gmx-users] Reaction-Field for coulombtype   Mahboobeh Eslami
• [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh Baftizadeh
• [gmx-users] angle-angle and bond-angle cross terms   João T. S. Coimbra
  • [gmx-users] angle-angle and bond-angle cross terms   Justin Lemkul
• [gmx-users] CNT ROTATION   ANDRES ADOLFO ORTEGA GUERRERO
  • [gmx-users] CNT ROTATION   Justin Lemkul
    • [gmx-users] CNT ROTATION   Dr. Vitaly Chaban
• [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh
  • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Mark Abraham
    • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh Baftizadeh
      • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh Baftizadeh
      • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Mark Abraham
      • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh Baftizadeh
      • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh
      • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh
      • [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Justin Lemkul
• [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh
• [gmx-users] Testing gromacs: Thermodynamics integration using tabulated potential   Fahimeh
• [gmx-users] Loop refirement using simulated annealing   James Starlight
  • [gmx-users] Loop refirement using simulated annealing   Christopher Neale
    • [gmx-users] Loop refirement using simulated annealing   James Starlight
• [gmx-users] Diferent Pressure Solvent   ANDRES ADOLFO ORTEGA GUERRERO
  • [gmx-users] Diferent Pressure Solvent   Justin Lemkul
    • [gmx-users] Diferent Pressure Solvent   Dr. Vitaly Chaban
• [gmx-users] Hydrogen bonds   bharat gupta
  • [gmx-users] Hydrogen bonds   Erik Marklund
  • [gmx-users] Hydrogen bonds   Justin Lemkul
• [gmx-users] Testing GROMACS: Solvation free energy tests using CGENFF   Fahimeh Baftizadeh
• [gmx-users] question about g_select   mojdeh akhavan
  • [gmx-users] question about g_select   Mark Abraham
• [gmx-users] CNT ROTATION   ANDRES ADOLFO ORTEGA GUERRERO
  • [gmx-users] CNT ROTATION   Justin Lemkul
• [gmx-users] trjconv problems   Steve Seibold
• [gmx-users] Diferent Pressure Solvent   ANDRES ADOLFO ORTEGA GUERRERO
  • [gmx-users] Diferent Pressure Solvent   Dr. Vitaly Chaban
• [gmx-users] Fwd: related to bug 1222   albert ardevol
  • [gmx-users] Fwd: related to bug 1222   Mark Abraham
• [gmx-users] Diferent Pressure Solvent   ANDRES ADOLFO ORTEGA GUERRERO
• [gmx-users] New Molecule Topology   Todor Antonijevic
  • [gmx-users] New Molecule Topology   Justin Lemkul
    • [gmx-users] New Molecule Topology   Todor Antonijevic
      • [gmx-users] New Molecule Topology   Justin Lemkul
      • [gmx-users] New Molecule Topology   lloyd riggs
• [gmx-users] help please @User-specified potential functions   Chetan Mahajan
  • [gmx-users] help please @User-specified potential functions   Mark Abraham
    • [gmx-users] help please @User-specified potential functions   Chetan Mahajan
      • [gmx-users] help please @User-specified potential functions   Chetan Mahajan
      • [gmx-users] help please @User-specified potential functions   Josip Lovrić
  • [gmx-users] help please @User-specified potential functions   Mark Abraham
    • [gmx-users] help please @User-specified potential functions   Chetan Mahajan
      • [gmx-users] help please @User-specified potential functions   Mark Abraham
      • [gmx-users] help please @User-specified potential functions   Chetan Mahajan
      • [gmx-users] help please @User-specified potential functions   Mark Abraham
      • [gmx-users] help please @User-specified potential functions   Chetan Mahajan
• [gmx-users] Secondary structure not visible after converting from .gro to .pdb   bharat gupta
  • [gmx-users] Secondary structure not visible after converting from .gro to .pdb   Justin Lemkul
  • [gmx-users] Secondary structure not visible after converting from .gro to .pdb   Christopher Neale
• [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   bharat gupta
  • [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   Justin Lemkul
    • [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   bharat gupta
  • [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   Christopher Neale
    • [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   bharat gupta
      • [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   bharat gupta
      • [gmx-users] Secondary structure not visible after convertingfrom .gro to .pdb   Justin Lemkul
• [gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb   bharat gupta
  • [gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb   Ali Khan
• [gmx-users] Secondary structure not visible afterconverting from .gro to .pdb   bharat gupta
  • [gmx-users] Secondary structure not visible afterconverting from .gro to .pdb   Mark Abraham
    • [gmx-users] Secondary structure not visible afterconverting from .gro to .pdb   bharat gupta
      • [gmx-users] Secondary structure not visible afterconverting from .gro to .pdb   Mark Abraham
      • [gmx-users] Secondary structure not visible afterconverting from .gro to .pdb   Erik Marklund
      • [gmx-users] Secondary structure not visible afterconverting from .gro to .pdb   Tsjerk Wassenaar
• [gmx-users] question   Atila Petrosian
  • [gmx-users] question   Mark Abraham
  • [gmx-users] question   Erik Marklund
• [gmx-users] dielectric constant of water by gromacs   David van der Spoel
  • [gmx-users] dielectric constant of water by gromacs   Harshkumar Singh
    • [gmx-users] dielectric constant of water by gromacs   David van der Spoel
      • [gmx-users] dielectric constant of water by gromacs   Harshkumar Singh
      • [gmx-users] 回复： g_dielectric errors for getting frequency dependent dielectric constants   来者可追
      • [gmx-users] g_dielectric errors for getting frequency dependent dielectric constants   550931258 at qq.com
• [gmx-users] question   Atila Petrosian
  • [gmx-users] question   Mark Abraham
• [gmx-users] Using Non-bonded interaction   라지브간디
  • [gmx-users] Using Non-bonded interaction   Justin Lemkul
• [gmx-users] 答复: Welcome to the "gromacs.org_gmx-users" mailing list   #ZHANG HAIPING#
  • [gmx-users] 答复: Welcome to the "gromacs.org_gmx-users" mailing list   Mark Abraham
    • [gmx-users] 答复: 答复: Welcome to the "gromacs.org_gmx-users" mailing list   #ZHANG HAIPING#
• [gmx-users] CNT ROTATION   ANDRES ADOLFO ORTEGA GUERRERO
  • [gmx-users] CNT ROTATION   Justin Lemkul
  • [gmx-users] CNT ROTATION   Dr. Vitaly Chaban
• [gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb   bharat gupta
• [gmx-users] A problem about g_dielectric   来者可追
• [gmx-users] Using Non-bonded interaction   라지브간디
  • [gmx-users] Using Non-bonded interaction   Justin Lemkul
• [gmx-users] LIE method   Mahboobeh Eslami
• [gmx-users] editconf - CoM?   Nicola Staffolani
• [gmx-users] editonf: Center of Mass?   Nicola Staffolani
• [gmx-users] editonf: Center of Mass?   Nicola Staffolani
  • [gmx-users] editonf: Center of Mass?   Justin Lemkul
    • [gmx-users] editonf: Center of Mass?   Nicola Staffolani
• [gmx-users] LIE method   Mahboobeh Eslami
  • [gmx-users] LIE method   Justin Lemkul
• [gmx-users] Fwd: related to bug 1222   Szilárd Páll
• [gmx-users] Non-bonded interaction.   라지브간디
  • [gmx-users] Non-bonded interaction.   Justin Lemkul
• [gmx-users] g_kinetics   bharat gupta
  • [gmx-users] Fwd: g_kinetics   bharat gupta
  • [gmx-users] g_kinetics   Mark Abraham
• [gmx-users] (no subject)   elham tazikeh
  • [gmx-users] (no subject)   Dhanachandra Singh
  • [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] LIE method   Mahboobeh Eslami
  • [gmx-users] LIE method   Justin Lemkul
• [gmx-users] g_kinetics   bharat gupta
• [gmx-users] Non-bonded interaction   라지브간디
  • [gmx-users] Non-bonded interaction   Mark Abraham
  • [gmx-users] Non-bonded interaction   Justin Lemkul
• [gmx-users] Reg Free enerfy calculation   vidhya sankar
  • [gmx-users] Reg Free enerfy calculation   Justin Lemkul

Last message date: Sat May 31 23:08:07 CEST 2014
Archived on: Sat May 31 23:08:08 CEST 2014

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