[gmx-users] PBC correction to visualize a protein-membrane structure

Juan Munoz-Garcia juan.munoz-garcia at bioch.ox.ac.uk
Fri May 16 15:08:54 CEST 2014

Thank you Justin,

please find a dropbox link to the image below.

I’ve used

trjconv_mpi -f NPT.trr -o NPT_2.trr -s NPT.tpr -pbc whole
trjconv_mpi -f NPT_2.trr -o NPT_PBC.trr -s NPT.tpr -pbc mol -ur compact -center

and different combinations of those


Thank you.
Juan C.

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