[gmx-users] PBC correction to visualize a protein-membrane structure

[Juan Munoz-Garcia]

Thank you Justin,

please find a dropbox link to the image below.

I’ve used

trjconv_mpi -f NPT.trr -o NPT_2.trr -s NPT.tpr -pbc whole
trjconv_mpi -f NPT_2.trr -o NPT_PBC.trr -s NPT.tpr -pbc mol -ur compact -center

and different combinations of those

https://www.dropbox.com/s/az1gvb299y6wh8h/Screen%20Shot%202014-05-06%20at%2021.15.07.png

Thank you.
Regards.
Juan C.