[gmx-users] PBC correction to visualize a protein-membrane structure

[Juan Munoz-Garcia]

Dear Mark,

I’ve used numbers. Just indicated them as x_box/2, etc to be clearer.

Juan C.


>
> Dear Justin,
>
> thank you. I’ve tried the following but neither of them worked, I get the
same result.
>
> trjconv -f input.gro -o output.gro -s .tpr -trans 0 0  z_box/2 -pbc mol
-ur compact
>
> trjconv -f input.gro -o output.gro -s tpr -trans x_box/2  y_box/2
 z_box/2 -pbc mol -ur compact

You need to use numbers.

Mark