[gmx-users] How to overcome the error "Atom P in residue DC 3 was not found in the rtp entry DC5 with 28 atoms while sorting atom."
palusoori at gmail.com
Mon Nov 3 06:33:00 CET 2014
Dear gromacs users
I have been tried to simulate the protein-dna complex. I got error as
"Atom P in residue DC 3 was not found in the rtp entry DC5 with 28 atoms
while sorting atom" upon using the command pdb2gmx. I have been added the P
atom and bonds of P in the .rtp file which is the part of AMBER99SB-ILDN
force field. After the modification of the dna.rtp file I also got the same
error which mentioned above.
Kindly tell me how to overcome this error.
Thanks in advance
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