[gmx-users] CMake Errors when installing gromacs-5.0.2 with Orca

[Matthew Kelley]

Hi Mark,

I re-unpacked the tar ball and got the same errors. I also re-downloaded
the tar ball and got the same errors as well. If I just use

cmake .. -DGMX_BUILD_OWN_FFTW=ON -DCMAKE_CXX_COMPILER=g++
-DCMAKE_C_COMPILER=gcc

I also get the same errors. As far as I can tell, all the files are
readable/have read permissions.

Thanks,
Matthew

On Fri, Nov 7, 2014 at 2:22 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> You've somehow made the normal Gromacs source files missing or
> unreadable... start afresh? And use your normal account until you need to
> make install?
>
> Mark
>
> On Fri, Nov 7, 2014 at 8:47 PM, Matthew Kelley <
> matthewkelley2017 at u.northwestern.edu> wrote:
>
> > Hello,
> >
> > I'm trying to install gromacs-5.0.2 on our local cluster with Orca using
> > CMake 3.0, and I'm running into a few issues. With a cmake command along
> > the lines of the following,
> >
> > cmake .. -DGMX_QMMM_PROGRAM=ORCA -DGMX_BUILD_OWN_FFTW=ON -DGMX_MPI=ON
> > -DCMAKE_INSTALL_PREFIX=/my_path/GROMACS-ORCA/ -DCMAKE_CXX_COMPILER=g++
> > -DCMAKE_C_COMPILER=gcc
> >
> > I get errors in the terminal that look like
> >
> >
> ----------------------------------------------------------------------------------------------------------------------------
> > You have called ADD_LIBRARY for library testutils without any source
> files.
> > This typically indicates a problem with your CMakeLists.txt file
> > -- Check if the system is big endian
> > -- Searching 16 bit integer
> > -- Using unsigned short
> > -- Check if the system is big endian - little endian
> > -- Looking for inttypes.h
> > -- Looking for inttypes.h - found
> > CMake Error at src/gromacs/gmxlib/CMakeLists.txt:46 (list):
> >   list sub-command REMOVE_ITEM requires two or more arguments.
> >
> >
> > CMake Error at src/gromacs/legacyheaders/CMakeLists.txt:41 (list):
> >   list sub-command REMOVE_ITEM requires two or more arguments.
> >
> >
> > CMake Error at src/gromacs/legacyheaders/CMakeLists.txt:42 (list):
> >   list sub-command REMOVE_ITEM requires two or more arguments.
> >
> >
> > -- Performing Test HAS_NO_UNUSED_PARAMETER
> > -- Performing Test HAS_NO_UNUSED_PARAMETER - Success
> > -- Performing Test HAS_NO_DEPRECATED_REGISTER
> > -- Performing Test HAS_NO_DEPRECATED_REGISTER - Success
> > You have called ADD_LIBRARY for library mdrun_objlib without any source
> > files. This typically indicates a problem with your CMakeLists.txt file
> > You have called ADD_LIBRARY for library view_objlib without any source
> > files. This typically indicates a problem with your CMakeLists.txt file
> > -- Configuring incomplete, errors occurred!
> >
> >
> ----------------------------------------------------------------------------------------------------------------------------------
> >
> > I'm not sure what I should be looking for in the log files or if I need
> to
> > fix my CMakeLists.txt file. I am running the cmake command from the
> > directory "build" inside the root gromacs-5.0.2 source directory. Please
> > let me know what I should do to correct these errors. I can add requisite
> > information from the log files if required.
> >
> > Thank you,
> > Matthew
> > --
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