[gmx-users] change in energy minimization

md kashif kashifzamir180.mk at gmail.com
Mon Nov 10 06:16:44 CET 2014


Dear all
I am new user and stuck with the energy minimization conflict.
I am following the gromacs tutorial (
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/index.html
 ,lysozyme
in water) for my protein and getting the energy minimized protein with
Epot= -1.5248922e+06  is this value correct? I have used mdp files same as
given in the sample tutorial.
Kindly reply

regards
Kashif


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