[gmx-users] Protein comparison

[Alexander Law]

You need to investigate further for your particular system and the questions you want answered. Then come back with specific questions and problems. 
________________________________________
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se [gromacs.org_gmx-users-bounces at maillist.sys.kth.se] on behalf of md kashif [kashifzamir180.mk at gmail.com]
Sent: Monday, November 17, 2014 5:07 PM
To: gromacs.org_gmx-users at maillist.sys.kth.se
Subject: Re: [gmx-users] Protein comparison

Dear all
 I have protein pdb file and protein+ligand pdb file generated after
docking. How can I compare them by using gromacs? With the word "compare "
I mean that what kind of analysis I can perform? Should I perform binding
energy calculation or rmsd calculation for protein stability change? Kindly
suggest any tutorial for help.

Thanks


On Sun, Nov 16, 2014 at 3:13 PM, md kashif <kashifzamir180.mk at gmail.com>
wrote:

> Dear all
>  I have protein pdb file and protein+ligand pdb file generated after
> docking. How can I compare them by using gromacs?
>
> Thanks
>
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