[gmx-users] g_correlation: "Software inconsistency error" Gromacs 3.3.0

David van der Spoel spoel at xray.bmc.uu.se
Sat Nov 29 06:09:56 CET 2014

On 2014-11-28 23:23, Ryan Choi wrote:
> Hello,
> Not sure if this is the right place to be asking this question. It is
> related to a gromacs tool, g_correlation. I installed this from
> https://www.mpibpc.mpg.de/grubmueller/g_correlation by downloading the
> source and compiling it, referencing GROMACS version 3.3 (3.3.0).
> I ran it with a .gro and .xtc (from trjconv'ing .gro on gromacs3.3) file of
> the same system and got:
> Software inconsistency error:
> Freeing symbol table (symtab) structure
> I grep'd software inconsistency error and don't know where g_correlation
> calls the symtab.c file (BTW symtab.c error line 194). I'm running
> ElementaryOS (Linux dist based on Ubuntu). The program gets as far as me
> selecting the group for least sq fit and group for the analysis (After
> which it crashes basically instantly).
> I'm just not sure what the problem is here? I'm running g_correlation on
> serial since there was something about MPI library not being found at the
> time of compiling g_correlation.
> Thank you,
> Ryan
Ask the people who distribute the software.

David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se

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