[gmx-users] In itp file from prodrg, what is C0 and C1 in bonds, angles and dihedrals section

Justin Lemkul jalemkul at vt.edu
Sat Oct 25 22:47:41 CEST 2014



On 10/25/14 4:36 PM, fatemeh ramezani wrote:
> Hi Dear gmx-users
> In itp file from prodrg, what is C0 and C1 in bonds, angles and dihedrals section;
>

"C" is for "constant," i.e. whatever parameters are needed for those bonded 
interactions.

-Justin

> [ bonds ]
> ; ai  aj  fu    c0, c1, ...
>
> [ angles ]
> ; ai  aj  ak  fu    c0, c1, ...
>
> [ dihedrals ]
> ; ai  aj  ak  al  fu    c0, c1, m, ...
>
>
>
> Thank you
>
> Fatemeh Ramezani
>

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
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University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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