[gmx-users] Martini + Elnedyn
tsjerkw at gmail.com
Tue Oct 28 16:04:23 CET 2014
By default, with martinize, the elastic network will be applied to each
chain separately. You'll need to explicitly merge chains to have a network
between two chains. So you should be fine following the tutorial like that.
On Tue, Oct 28, 2014 at 3:01 PM, Adriana Garro <adrianagarrosl at gmail.com>
> Dear Gromacs users,
> I am interested in apply Martini + Elnedyn to my system so I followed the
> and it works well, now I am using the same script provided by the tutorial
> but as my system is different (I am trying to use TMD as well) I would
> need to perform some modifications, for example I dont want elastic
> network between the 2 molecules because they are not different chains of
> the same macromolecule like in the tutorial so my question is: is it
> possible to use in the same box 2 differents networks one to each molecule?
> Can someone suggest some tutorial or paper related to this topic?
> Thanks in advance.
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Tsjerk A. Wassenaar, Ph.D.
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