[gmx-users] mdrun error message in Computing Cluster

[Mark Abraham]

Hi,

I've never seen that error. I hope you have a compelling scientific reason
for installing such a slow old version :-)

Mark
On Oct 31, 2014 1:58 AM, "Agnivo Gosai" <agnivogromacs14 at gmail.com> wrote:

> Dear Users
>
> I compiled double precision Gromacs 4.5.6 in my university cluster ( named
> CyEnce ).
> It is the serial version as I did not compile mdrun separately as parallel
> mdrun.
> I followed the procedure in the below mentioned link :-
> http://ringo.ams.sunysb.edu/index.php/Compiling_GROMACS_on_Cluster
> But while using mdrun I am getting the following error :-
>
> Reading file em.tpr, VERSION 4.5.6 (double precision)
> Starting 16 threads
> tMPI Fatal error in pthreads.c, line 202: Failed to create POSIX
> thread:Resource temporarily unavailable, rc=11
> Aborted
>
> I am not sure as to what this means. Any suggestions please ??
>
> Thanks & Regards
> Agnivo Gosai
> Grad Student, Iowa State University.
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