[gmx-users] Gromacs 5.1.2 installation problem

Husen R hus3nr at gmail.com
Tue Apr 5 09:19:16 CEST 2016

Dear all,

I already installed gromacs-5.1.2 succesfully with the following
instruction :

tar xfz gromacs-5.1.2.tar.gz
cd gromacs-5.1.2
mkdir build
cd build
make check
sudo make install
source /usr/local/gromacs/bin/GMXRC

However, after finishing installation I can not use mdrun, pdb2gmx
(and possibly other commands).
The following is the error message when I tried to run pdb2gmx command.

The program 'pdb2gmx' is currently not installed. You can install it by typing:
sudo apt-get install gromacs

I tried to find those commands using "locate" command but they're
doesn't exist as if gromacs is not installed.
Note : The installation directory /usr/local/gromacs is exist.

anyone please tell me what will be the cause of this problem ?



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