[gmx-users] Problem in auto source

Roshan Shrestha roshanpra at gmail.com
Mon Apr 25 21:09:16 CEST 2016


This is my .bashrc file and it looks like this-

> # ~/.bashrc: executed by bash(1) for non-login shells.
> # see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
> # for examples
>
> # If not running interactively, don't do anything
> case $- in
>     *i*) ;;
>       *) return;;
> esac
>
> # don't put duplicate lines or lines starting with space in the history.
> # See bash(1) for more options
> HISTCONTROL=ignoreboth
>
> # append to the history file, don't overwrite it
> shopt -s histappend
>
> # for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
> HISTSIZE=1000
> HISTFILESIZE=2000
>
> # check the window size after each command and, if necessary,
> # update the values of LINES and COLUMNS.
> shopt -s checkwinsize
>
> # If set, the pattern "**" used in a pathname expansion context will
> # match all files and zero or more directories and subdirectories.
> #shopt -s globstar
>
> # make less more friendly for non-text input files, see lesspipe(1)
> [ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
>
> # set variable identifying the chroot you work in (used in the prompt
> below)
> if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
>     debian_chroot=$(cat /etc/debian_chroot)
> fi
>
> # set a fancy prompt (non-color, unless we know we "want" color)
> case "$TERM" in
>     xterm-color|*-256color) color_prompt=yes;;
> esac
>
> # uncomment for a colored prompt, if the terminal has the capability;
> turned
> # off by default to not distract the user: the focus in a terminal window
> # should be on the output of commands, not on the prompt
> #force_color_prompt=yes
>
> if [ -n "$force_color_prompt" ]; then
>     if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
>     # We have color support; assume it's compliant with Ecma-48
>     # (ISO/IEC-6429). (Lack of such support is extremely rare, and such
>     # a case would tend to support setf rather than setaf.)
>     color_prompt=yes
>     else
>     color_prompt=
>     fi
> fi
>
> if [ "$color_prompt" = yes ]; then
>     PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$
> '
> else
>     PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
> fi
> unset color_prompt force_color_prompt
>
> # If this is an xterm set the title to user at host:dir
> case "$TERM" in
> xterm*|rxvt*)
>     PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
>     ;;
> *)
>     ;;
> esac
>
> # enable color support of ls and also add handy aliases
> if [ -x /usr/bin/dircolors ]; then
>     test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval
> "$(dircolors -b)"
>     alias ls='ls --color=auto'
>     #alias dir='dir --color=auto'
>     #alias vdir='vdir --color=auto'
>
>     alias grep='grep --color=auto'
>     alias fgrep='fgrep --color=auto'
>     alias egrep='egrep --color=auto'
> fi
>
> # colored GCC warnings and errors
> #export
> GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
>
> # some more ls aliases
> alias ll='ls -alF'
> alias la='ls -A'
> alias l='ls -CF'
>
> # Add an "alert" alias for long running commands.  Use like so:
> #   sleep 10; alert
> alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal
> || echo error)" "$(history|tail -n1|sed -e
> '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
>
> # Alias definitions.
> # You may want to put all your additions into a separate file like
> # ~/.bash_aliases, instead of adding them here directly.
> # See /usr/share/doc/bash-doc/examples in the bash-doc package.
>
> if [ -f ~/.bash_aliases ]; then
>     . ~/.bash_aliases
> fi
>
> # enable programmable completion features (you don't need to enable
> # this, if it's already enabled in /etc/bash.bashrc and /etc/profile
> # sources /etc/bash.bashrc).
> if ! shopt -oq posix; then
>   if [ -f /usr/share/bash-completion/bash_completion ]; then
>     . /usr/share/bash-completion/bash_completion
>   elif [ -f /etc/bash_completion ]; then
>     . /etc/bash_completion
>   fi
> fi
> source /usr/local/gromacs/bin/GMXRC
>
>>
>> So, there is this line *source /usr/local/gromacs/bin/GMXRC*  . But,
gromacs is still not suto sourced whenever I open the new terminal. Thanks


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