[gmx-users] Problem in auto source

[Irem Altan]

Hi,

Can you try source /usr/local/gromacs/bin/GMXRC.bash ? I had the same problem and this works for me.

Best,
Irem

>> 
> On Apr 25, 2016, at 3:08 PM, Roshan Shrestha <roshanpra at gmail.com> wrote:
> 
> This is my .bashrc file and it looks like this-
> 
>> # ~/.bashrc: executed by bash(1) for non-login shells.
>> # see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
>> # for examples
>> 
>> # If not running interactively, don't do anything
>> case $- in
>>    *i*) ;;
>>      *) return;;
>> esac
>> 
>> # don't put duplicate lines or lines starting with space in the history.
>> # See bash(1) for more options
>> HISTCONTROL=ignoreboth
>> 
>> # append to the history file, don't overwrite it
>> shopt -s histappend
>> 
>> # for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
>> HISTSIZE=1000
>> HISTFILESIZE=2000
>> 
>> # check the window size after each command and, if necessary,
>> # update the values of LINES and COLUMNS.
>> shopt -s checkwinsize
>> 
>> # If set, the pattern "**" used in a pathname expansion context will
>> # match all files and zero or more directories and subdirectories.
>> #shopt -s globstar
>> 
>> # make less more friendly for non-text input files, see lesspipe(1)
>> [ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
>> 
>> # set variable identifying the chroot you work in (used in the prompt
>> below)
>> if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
>>    debian_chroot=$(cat /etc/debian_chroot)
>> fi
>> 
>> # set a fancy prompt (non-color, unless we know we "want" color)
>> case "$TERM" in
>>    xterm-color|*-256color) color_prompt=yes;;
>> esac
>> 
>> # uncomment for a colored prompt, if the terminal has the capability;
>> turned
>> # off by default to not distract the user: the focus in a terminal window
>> # should be on the output of commands, not on the prompt
>> #force_color_prompt=yes
>> 
>> if [ -n "$force_color_prompt" ]; then
>>    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
>>    # We have color support; assume it's compliant with Ecma-48
>>    # (ISO/IEC-6429). (Lack of such support is extremely rare, and such
>>    # a case would tend to support setf rather than setaf.)
>>    color_prompt=yes
>>    else
>>    color_prompt=
>>    fi
>> fi
>> 
>> if [ "$color_prompt" = yes ]; then
>>    PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$
>> '
>> else
>>    PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
>> fi
>> unset color_prompt force_color_prompt
>> 
>> # If this is an xterm set the title to user at host:dir
>> case "$TERM" in
>> xterm*|rxvt*)
>>    PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
>>    ;;
>> *)
>>    ;;
>> esac
>> 
>> # enable color support of ls and also add handy aliases
>> if [ -x /usr/bin/dircolors ]; then
>>    test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval
>> "$(dircolors -b)"
>>    alias ls='ls --color=auto'
>>    #alias dir='dir --color=auto'
>>    #alias vdir='vdir --color=auto'
>> 
>>    alias grep='grep --color=auto'
>>    alias fgrep='fgrep --color=auto'
>>    alias egrep='egrep --color=auto'
>> fi
>> 
>> # colored GCC warnings and errors
>> #export
>> GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
>> 
>> # some more ls aliases
>> alias ll='ls -alF'
>> alias la='ls -A'
>> alias l='ls -CF'
>> 
>> # Add an "alert" alias for long running commands.  Use like so:
>> #   sleep 10; alert
>> alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal
>> || echo error)" "$(history|tail -n1|sed -e
>> '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
>> 
>> # Alias definitions.
>> # You may want to put all your additions into a separate file like
>> # ~/.bash_aliases, instead of adding them here directly.
>> # See /usr/share/doc/bash-doc/examples in the bash-doc package.
>> 
>> if [ -f ~/.bash_aliases ]; then
>>    . ~/.bash_aliases
>> fi
>> 
>> # enable programmable completion features (you don't need to enable
>> # this, if it's already enabled in /etc/bash.bashrc and /etc/profile
>> # sources /etc/bash.bashrc).
>> if ! shopt -oq posix; then
>>  if [ -f /usr/share/bash-completion/bash_completion ]; then
>>    . /usr/share/bash-completion/bash_completion
>>  elif [ -f /etc/bash_completion ]; then
>>    . /etc/bash_completion
>>  fi
>> fi
>> source /usr/local/gromacs/bin/GMXRC
>> 
>>> 
>>> So, there is this line *source /usr/local/gromacs/bin/GMXRC*  . But,
> gromacs is still not suto sourced whenever I open the new terminal. Thanks
> -- 
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