[gmx-users] chainsep in pdb2gmx

[Urszula Uciechowska]

Dear gmx users,

I am trying to prepare a protein-dimer DNA complex for MD. The problem is
that after running pdb2gmx some of the chains are joined. How to use
chainsep to separate for example chain A and chain B. In my pdb file
chains are separated by TER flag but it still does not work.

thanks for any advice

best
Ula



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Urszula Uciechowska PhD
University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Abrahama 58
80-307 Gdańsk
Poland


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Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego
http://www.ug.edu.pl/