[gmx-users] chainsep in pdb2gmx

Urszula Uciechowska urszula.uciechowska at biotech.ug.edu.pl
Tue Mar 14 13:40:00 CET 2017

Dear gmx users,

I am trying to prepare a protein-dimer DNA complex for MD. The problem is
that after running pdb2gmx some of the chains are joined. How to use
chainsep to separate for example chain A and chain B. In my pdb file
chains are separated by TER flag but it still does not work.

thanks for any advice


Urszula Uciechowska PhD
University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Abrahama 58
80-307 Gdańsk

Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego

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