[gmx-users] Pressure in NPT simulation
Mishelle Oña
samimishu at hotmail.com
Sun Mar 19 20:17:53 CET 2017
Hello,
I have a question concerning pressure. I runned a NPT simulation with the following parameters:
; Pressure coupling
Pcoupl = Berendsen
Pcoupltype = Isotropic
tau_p = 1.01325
compressibility = 4.5e-5
ref_p = 1.01325
When analyzing the average pressure using g_energy I got this results:
Energy Average Err.Est. RMSD Tot-Drift
-------------------------------------------------------------------------------
Potential -128613 9.9 363.247 -65.2445 (kJ/mol)
Kinetic En. 24189.2 1.4 242.381 -6.10124 (kJ/mol)
Total Energy -104424 11 440.485 -71.3457 (kJ/mol)
Temperature 300.544 0.018 3.01152 -0.0758065 (K)
Pressure 323.536 0.65 244.361 -3.94119 (bar)
I wonder why the simulation cannot descent to the ref_p value. It is a system of a polymer in a box full of water.
Thanks for the answer and help.
Mishelle
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