[gmx-users] DSSP

Aishwarya Dhar dhar.aishwarya at gmail.com
Tue Mar 21 10:13:17 CET 2017

Following procedure I have used
1. Downloaded  http://swift.cmbi.ru.nl/gv/dssp/
dssp-2.0.4-linux-i386 and renamed it dssp

2.made dssp  executable  and moved it to usr/local/bin

3.Then ran the command from the current location where the tpr and trr
files are present do_dssp -s  md.tpr -f md.trr -o ss.xpm  -ver 2.0

4.There are 91 residues in your selected group dssp cmd='/usr/local/bin/dssp
-i ddixopnV -o dd4YitS9 > /dev/null 2> /dev/null'
trn version: GMX_trn_file (single precision)
Reading frame       0 time    0.000
Back Off! I just backed up ddixopnV to ./#ddixopnV.1#

It seems that the run is going on for two weeks and dssp analysis couldnt
be done



Aishwarya Dhar

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