[gmx-users] Documentation on gmx densorder?
David van der Spoel
spoel at xray.bmc.uu.se
Fri Aug 31 11:46:22 CEST 2018
Den 2018-08-30 kl. 15:34, skrev Smith, Micholas D.:
> Dear GMX users,
> I was wondering if anyone has used the gmx densorder (originally g_densorder) in the past utility in the past. I have system with an interface and the idea of "
> gmx densorder reduces a two-phase density distribution along an axis, computed
> over a MD trajectory, to 2D surfaces fluctuating in time, by a fit to a
> functional profile for interfacial densities" seems rather interesting. However, I haven't found any more documentation on this tool (i.e. what the binary format of its output is actually used for).
> If anyone has used it and has some pointers on what the output should be read with, or remembers the paper(s) it originated from it would be quite useful.
Guilty as charged:
It was the student who implemented the code and used it however, but
feel free to contact me off line if you have more questions.
> Micholas Dean Smith, PhD. MRSC
> Post-doctoral Research Associate
> University of Tennessee/Oak Ridge National Laboratory
> Center for Molecular Biophysics
David van der Spoel, Ph.D., Professor of Biology
Head of Department, Cell & Molecular Biology, Uppsala University.
Box 596, SE-75124 Uppsala, Sweden. Phone: +46184714205.
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