[gmx-users] Regarding high RMSD

[Ashma Khan]

Dear all,
I have calculated the c-alpha RMSD of dimer having 7 residues peptide each
by using command gmx rms. But the calculated RMSD 14 Angstorm is very high,
although I have applied all pbc conditions. Anybody can suggest me why so
much high RMSD is coming or is it possible.

-- 
Ashma Khan
Research Scholar
Department of Chemistry
AMU, Aligarh