[gmx-users] DNA-Protein complex

[Dallas Warren]

Check the literature to see what others that are simulating similar
molecules are using and looking to study similar "things" (energies,
structures etc) that you are.

Catch ya,

Dr. Dallas Warren
Drug Delivery, Disposition and Dynamics
Monash Institute of Pharmaceutical Sciences, Monash University
381 Royal Parade, Parkville VIC 3052
dallas.warren at monash.edu
---------------------------------
When the only tool you own is a hammer, every problem begins to resemble a
nail.


On Wed, 29 Jan 2020 at 00:53, Rakesh Bhowmick <inforak.007 at gmail.com> wrote:

> I am new in the field of molecular dynamics and simulation. I am trying to
> learn online tutorial for gromacs. I have docked my DNA with protein in
> HADDOCK. I want to run a simulation in gromacs. Can I make topology file of
> the complex together or I need to make topology file separately. Which
> forcefield should I use for DNA protein complex?
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