[gmx-users] Reference value for berger POPC area per headgroup
T.Piggot at soton.ac.uk
Tue May 20 15:45:30 CEST 2014
You can have a look at:
In these simulations I used a few different variants in terms of both cut-off's and the 'Berger' force field parameters, and so there isn't just one reference value as the APL is dependent upon these different parameters.
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se [gromacs.org_gmx-users-bounces at maillist.sys.kth.se] on behalf of Gmx QA [gmxquestions at gmail.com]
Sent: 20 May 2014 12:16
To: Discussion list for GROMACS users
Subject: [gmx-users] Reference value for berger POPC area per headgroup
I have a question about which value to aim for as a reference for the
berger lipids and POPC area per head group.
In Justin Lemkul's tutorial, the value 65.8 A^2 is reported, along with a
reference to a 1998 Tieleman et al. paper.
However, I have read that paper now twice and cannot find this value
There are also two popc-systems available for download from the Tieleman
website, but neither of those give 65.8 A^2, at least in my hands.
Could someone please enlighten me about a good reference value for berger
Gromacs Users mailing list
* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.
More information about the gromacs.org_gmx-users