[gmx-users] Gromacs for reverse transformation

shivangi nangia shivangi.nangia at gmail.com
Thu May 22 16:32:49 CEST 2014


I want to do a reverse transformation of my system containing: bi-layer,
protein and water.

The Martini website (
http://md.chem.rug.nl/cgmartini/index.php/reverse-transformation) says to
install gromacs version 3.3.1

I am currently using 4.6.1 gromacs version.

ques A: Is this version incapable of the transformation?

Also, the martini website says to:

*"1. Unpack the rev_trans.tar.gz in the MARTINITUTORIAL directory that
contains all necessary gromacs files for this exercise.*

*2. Compile and/or source the modifi ed version of gromacs (remember this
tool is based upon gromacs version 3.3.1 and needs the corresponding tricks
and threats to be compiled.)*

*source /where-ever-you-installed-it/gromacs-3.3.1/bin/GMXRC"*

ques B:On performing untar on rev_trans.tar.gz there is no MARTINITUTORIAL
ques C: On performing untar on gmx_rev.tar.gz there is no bin folder

KIndly help.


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