[gmx-users] Gromacs for reverse transformation

[Tsjerk Wassenaar]

Hi sxn,

I would argue that that method for reverse transformation is largely
obsolete. Please have a look at
http://www.cgmartini.nl/cgmartini/index.php/back

Cheers,

Tsjerk


On Thu, May 22, 2014 at 4:26 PM, shivangi nangia
<shivangi.nangia at gmail.com>wrote:

> Hello,
>
> I want to do a reverse transformation of my system containing: bi-layer,
> protein and water.
>
> The Martini website (
> http://md.chem.rug.nl/cgmartini/index.php/reverse-transformation) says to
> install gromacs version 3.3.1
>
> I am currently using 4.6.1 gromacs version.
>
> ques A: Is this version incapable of the transformation?
>
> Also, the martini website says to:
>
> *"1. Unpack the rev_trans.tar.gz in the MARTINITUTORIAL directory that
> contains all necessary gromacs files for this exercise.*
>
> *2. Compile and/or source the modifi ed version of gromacs (remember this
> tool is based upon gromacs version 3.3.1 and needs the corresponding tricks
> and threats to be compiled.)*
>
> *source /where-ever-you-installed-it/gromacs-3.3.1/bin/GMXRC"*
>
>
> ques B:On performing untar on rev_trans.tar.gz there is no MARTINITUTORIAL
> directory
> ques C: On performing untar on gmx_rev.tar.gz there is no bin folder
>
> KIndly help.
>
> Thanks,
> sxn
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-- 
Tsjerk A. Wassenaar, Ph.D.