[gmx-users] PRODRG

Negar Parvizi negar.parvizi at yahoo.com
Mon May 26 19:09:12 CEST 2014

Dear all users,

I am using Protein-Ligand Complex tutorial (Justin Lemkul tutorial). For making .pdb file of ligand, we should use PRODRG(draw molecule with JME Editor).
 Here is my question that when i draw my ligand in JME Editor, which conformer should i select ? because different conformer gives different PRODRG output files.

Thanks in advance,

More information about the gromacs.org_gmx-users mailing list