[gmx-users] How to obtaine different protein orientations in a biphasic system

James Lord jjamesgreen110 at gmail.com
Wed Nov 12 21:29:50 CET 2014

Dear users,
I have inserted a protein in a biphasic system (like Justin tutorial). My
question is if I want to sample different orientations of protein to one of
the phases how should I do that? I have rotated the protein with different
angles  (90,180,270) around X,Y,Z axes  but as I have periodic boundary
condition in XYZ, Am I really obtaining different orientations? any
comments is appreciated

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