[gmx-users] trjconv gets stuck on frame

[Mark Abraham]

Hi,

The output does drop in frequency at some point, so that might be all you
are seeing. Experiment with -b and values around the putative problem area.

Mark
On Oct 26, 2014 6:59 PM, "Eric Smoll" <ericsmoll at gmail.com> wrote:

> Hello Gromacs users,
>
> I have a trajectory file script18_o.trr that I am trying to process. Using
> gmxcheck, this file appears to be complete. When I execute the command
> below
>
> trjconv -f ../script18/script18_o.trr -s ../script17/script17_o.tpr -o
> tmp1.trr -pbc whole << EOF
> 0
> EOF
>
> the code moves quickly through the first few hundred frames only to
> consistently get stuck on frame 300...
>
> trn version: GMX_trn_file (single precision)
>  ->  frame    320 time  128.000        ->  frame    300 time  120.000
>
> How do I troubleshoot the problem?
>
> -Eric
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