December 2017 Archives by thread

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Starting: Fri Dec 1 02:27:01 CET 2017
Ending: Sun Dec 31 16:20:11 CET 2017
Messages: 407

[gmx-users] 2018-beta1: PME/GPU performance question Szilárd Páll
- [gmx-users] 2018-beta1: PME/GPU performance question Jochen Hub
[gmx-users] Link atoms issue: QMMM simulation Zachary Smithline
[gmx-users] Distances calculation in umbrella sampling Kingsley Theras Primus Dass .
- [gmx-users] Distances calculation in umbrella sampling Amir Zeb
[gmx-users] G-mmpbsa Nikhil Maroli
[gmx-users] g_sham experimental weighting with temperature Yasser Bruno Ruiz Blanco
- [gmx-users] g_sham experimental weighting with temperature Yasser Bruno Ruiz Blanco
[gmx-users] CfP EuroVis 2018 Workshop on Molecular Graphics and Visual Analysis of Molecular Data Björn Sommer
[gmx-users] Link atoms issue: QMMM simulation (Zachary Smithline) Groenhof, Gerrit
[gmx-users] one protein and 4 ligands Mahboobeh Eslami
- [gmx-users] one protein and 4 ligands Justin Lemkul
[gmx-users] Step.pdb generated during energy minimization vijayakumar gosu
- [gmx-users] Step.pdb generated during energy minimization Justin Lemkul
[gmx-users] question of perturbing order in single topology FEP, gromacs asaffarhi at post.tau.ac.il
[gmx-users] BONDS BREAK DURING MINIMIZATION Vidya R
- [gmx-users] BONDS BREAK DURING MINIMIZATION Justin Lemkul
[gmx-users] Umbrella sampling rose rahmani
- [gmx-users] Umbrella sampling rose rahmani
  - [gmx-users] Umbrella sampling Justin Lemkul
    - [gmx-users] Umbrella sampling rose rahmani
    - [gmx-users] Umbrella sampling rose rahmani
    - [gmx-users] Umbrella sampling rose rahmani
- [gmx-users] Umbrella sampling Justin Lemkul
[gmx-users] help with wham analysis Srinivasa Ramisetti
[gmx-users] Conversion of charmm36 parameters from namd to gromacs Daniel Bauer
- [gmx-users] Conversion of charmm36 parameters from namd to gromacs Justin Lemkul
  - [gmx-users] Conversion of charmm36 parameters from namd to gromacs Daniel Bauer
    - [gmx-users] Conversion of charmm36 parameters from namd to gromacs Justin Lemkul
- [gmx-users] Conversion of charmm36 parameters from namd to gromacs Daniel Bauer
  - [gmx-users] Conversion of charmm36 parameters from namd to gromacs Justin Lemkul
    - [gmx-users] Conversion of charmm36 parameters from namd to gromacs Daniel Bauer
    - [gmx-users] Conversion of charmm36 parameters from namd to gromacs Justin Lemkul
[gmx-users] one protein and 4 ligands Mahboobeh Eslami
- [gmx-users] one protein and 4 ligands Justin Lemkul
[gmx-users] request mmahmoudig at razi.tums.ac.ir
- [gmx-users] request Justin Lemkul
[gmx-users] Umbrella sampling simulation stopped in middle. Sailesh Bataju
- [gmx-users] Umbrella sampling simulation stopped in middle. Justin Lemkul
[gmx-users] Problem with topology generation by Amber 12 ff Amir Zeb
- [gmx-users] Problem with topology generation by Amber 12 ff Justin Lemkul
  - [gmx-users] Problem with topology generation by Amber 12 ff Amir Zeb
[gmx-users] force field packages Zahedeh Bashardanesh
- [gmx-users] force field packages Mark Abraham
[gmx-users] how to creat new.rtp for acetylated lysine (ALY) Mehreen Jan
- [gmx-users] how to creat new.rtp for acetylated lysine (ALY) Justin Lemkul
[gmx-users] Topology file of molecule Krzysztof Kolman
- [gmx-users] Topology file of molecule Justin Lemkul
  - [gmx-users] Topology file of molecule Krzysztof Kolman
[gmx-users] Metal-Protein interactions RAHUL SURESH
- [gmx-users] Metal-Protein interactions Justin Lemkul
  - [gmx-users] Metal-Protein interactions RAHUL SURESH
    - [gmx-users] Metal-Protein interactions Justin Lemkul
    - [gmx-users] Metal-Protein interactions RAHUL SURESH
    - [gmx-users] Metal-Protein interactions Justin Lemkul
[gmx-users] Usage of GROMACS Momin Ahmad
- [gmx-users] Usage of GROMACS Smith, Micholas D.
  - [gmx-users] Usage of GROMACS Momin Ahmad
[gmx-users] lost particles while sorting soumadwip ghosh
- [gmx-users] Fwd: lost particles while sorting soumadwip ghosh
  - [gmx-users] Fwd: lost particles while sorting Mark Abraham
[gmx-users] request mmahmoudig at razi.tums.ac.ir
[gmx-users] Same parameters for ADP single P-O bonds and double P=O bonds in in acpype (GAFF) topology Robert König
[gmx-users] request mmahmoudig at razi.tums.ac.ir
[gmx-users] request mmahmoudig at razi.tums.ac.ir
[gmx-users] FaQ paramters for ADP topology with acpype Robert König
[gmx-users] request Rakesh Pant
- [gmx-users] request Dallas Warren
[gmx-users] DSSP Vidya R
- [gmx-users] DSSP Vytautas Rakeviius
- [gmx-users] DSSP João Henriques
  - [gmx-users] DSSP Vidya R
    - [gmx-users] DSSP João Henriques
    - [gmx-users] DSSP Vidya R
    - [gmx-users] DSSP Mark Abraham
    - [gmx-users] DSSP João Henriques
[gmx-users] Tutorial for calculating diffusion from umbrella sampling atb files
[gmx-users] request mmahmoudig at razi.tums.ac.ir
- [gmx-users] request Mark Abraham
[gmx-users] trjcat options bibhab majumdar
[gmx-users] Help to interpret the energy terms for gmx energy Jose
- [gmx-users] Help to interpret the energy terms for gmx energy Mark Abraham
[gmx-users] Pressure through one direction ali akgün
- [gmx-users] Pressure through one direction Mark Abraham
[gmx-users] How the index is recognised for values more than 99999? ZHANG Cheng
- [gmx-users] How the index is recognised for values more than 99999? Mark Abraham
  - [gmx-users] How the index is recognised for values more than 99999? ZHANG Cheng
    - [gmx-users] How the index is recognised for values more than 99999? Justin Lemkul
[gmx-users] Using custom potential for electrostatics between protein and water Aram Davtyan
- [gmx-users] Using custom potential for electrostatics between protein and water Mark Abraham
[gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field Dhaniram Mahato
- [gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field Mark Abraham
  - [gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field Dhaniram Mahato
    - [gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field Mark Abraham
[gmx-users] RADIAL DISTRIBUTION FUNTION Neha Gupta
[gmx-users] Unable to write whole trajectory with trjconv and error in gmx check Dasgupta, R.
[gmx-users] Using custom potential for electrostatics between protein and water Aram Davtyan
- [gmx-users] Using custom potential for electrostatics between protein and water Srinivasa Ramisetti
[gmx-users] different pull force constants Srinivasa Ramisetti
[gmx-users] Using custom potential for electrostatics between protein and water Aram Davtyan
[gmx-users] Using custom potential for electrostatics between protein and water Aram Davtyan
[gmx-users] g_sham experimental weighting with temperature Yasser Bruno Ruiz Blanco
[gmx-users] non-bonded potential Velia Minicozzi
[gmx-users] output - em.gro looks very strange MD
- [gmx-users] output - em.gro looks very strange Justin Lemkul
  - [gmx-users] output - em.gro looks very strange MD
    - [gmx-users] output - em.gro looks very strange MD
    - [gmx-users] output - em.gro looks very strange MD
[gmx-users] modifying aminoacids.n.tdb in amber14sb.ff Simon Kit Sang Chu
- [gmx-users] modifying aminoacids.n.tdb in amber14sb.ff Justin Lemkul
[gmx-users] The sum of the two largest charge group radii (32.555389) is larger than rlist Aram Davtyan
- [gmx-users] The sum of the two largest charge group radii (32.555389) is larger than rlist Mark Abraham
[gmx-users] phosphorylated protein parametrization zeljko.svedruzic at biotech.uniri.hr
- [gmx-users] phosphorylated protein parametrization R C Dash
- [gmx-users] phosphorylated protein parametrization R C Dash
[gmx-users] phosphorylated protein parametrization Robert König
[gmx-users] recognition two phase in gromacs kordzadeh at aut.ac.ir
- [gmx-users] recognition two phase in gromacs Mark Abraham
[gmx-users] gmx sasa Sudip Das
[gmx-users] The sum of the two largest charge group radii Akbar Shaikh
- [gmx-users] The sum of the two largest charge group radii Mark Abraham
[gmx-users] The sum of the two largest charge group radii (32.555389) is larger than rlist Akbar Shaikh
[gmx-users] Simulation using disiloxane as a solvent Akbar Shaikh
- [gmx-users] Simulation using disiloxane as a solvent Mark Abraham
[gmx-users] Surface tension from gmx energy Own 12121325
[gmx-users] DSSP installation spss4 at iacs.res.in
- [gmx-users] DSSP installation João Henriques
  - [gmx-users] DSSP installation spss4 at iacs.res.in
  - [gmx-users] DSSP installation spss4 at iacs.res.in
    - [gmx-users] DSSP installation João Henriques
[gmx-users] recognition two phase in gromacs azadeh kordzadeh
[gmx-users] determine surface tension on carbon nanotube azadeh kordzadeh
[gmx-users] evaluating stability Dave M
[gmx-users] couple-moltype Jo
- [gmx-users] couple-moltype Mark Abraham
[gmx-users] determine surface tension on carbon nanotube kordzadeh at aut.ac.ir
[gmx-users] Installing gromacs on the windows 10 linux subsystem A. Alamir
- [gmx-users] Installing gromacs on the windows 10 linux subsystem Dan Gil
  - [gmx-users] Installing gromacs on the windows 10 linux subsystem A. Alamir
    - [gmx-users] Installing gromacs on the windows 10 linux subsystem P C Kroon
    - [gmx-users] Installing gromacs on the windows 10 linux subsystem A. Alamir
[gmx-users] nvt wouldn't run even after fixing the pdb file MD
- [gmx-users] nvt wouldn't run even after fixing the pdb file Dallas Warren
[gmx-users] Creating a chain of homo polymer from a non standard residue Janakiraman Balachandran
[gmx-users] Gromacs 2018b1: Computing PME on GPUs Jernej Zidar
- [gmx-users] Gromacs 2018b1: Computing PME on GPUs Alex
- [gmx-users] Gromacs 2018b1: Computing PME on GPUs Mark Abraham
[gmx-users] Creating a chain of homo polymer from a non standard residue Janakiraman Balachandran
[gmx-users] gmx sasa Sudip Das
[gmx-users] [MGMS-DS]: Molecular Modelling Workshop March 12-14, 2018 in Erlangen, Germany Harald Lanig
[gmx-users] Gromacs 2018b1: Computing PME on GPUs Szilárd Páll
[gmx-users] GROMACS 2018 second beta Mark Abraham
- [gmx-users] GROMACS 2018 second beta Ali Ahmed
[gmx-users] Performance gains with AVX_512 ? Kutzner, Carsten
- [gmx-users] Performance gains with AVX_512 ? Szilárd Páll
  - [gmx-users] Performance gains with AVX_512 ? Kutzner, Carsten
[gmx-users] graphene wall piston acceleration simulation Tam, Benjamin
[gmx-users] openmpi execution using sbatch & mpirun every command executed several times Vedat Durmaz
- [gmx-users] openmpi execution using sbatch & mpirun every command executed several times Mark Abraham
  - [gmx-users] openmpi execution using sbatch & mpirun every commandexecuted several times P C Kroon
[gmx-users] Selection Error for RDF calculations Pandya, Akash
- [gmx-users] Selection Error for RDF calculations Justin Lemkul
[gmx-users] my minimization structure looks like a messy box? MD
- [gmx-users] my minimization structure looks like a messy box? Justin Lemkul
  - [gmx-users] my minimization structure looks like a messy box? MD
    - [gmx-users] my minimization structure looks like a messy box? Justin Lemkul
    - [gmx-users] my minimization structure looks like a messy box? MD
    - [gmx-users] my minimization structure looks like a messy box? Dilip H N
[gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Sudip Das
- [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein RAHUL SURESH
  - [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Sudip Das
- [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Justin Lemkul
  - [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Sudip Das
    - [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Justin Lemkul
    - [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Sudip Das
    - [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Justin Lemkul
    - [gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein Sudip Das
[gmx-users] Parameter file, regarding RAHUL SURESH
[gmx-users] my minimization structure looks like a messy box? Shi Li
- [gmx-users] my minimization structure looks like a messy box? Justin Lemkul
[gmx-users] protein fragmented issue for minimization MD
- [gmx-users] protein fragmented issue for minimization Justin Lemkul
  - [gmx-users] protein fragmented issue for minimization MD
    - [gmx-users] protein fragmented issue for minimization Justin Lemkul
[gmx-users] SPC model hydrogen bonding atb files
- [gmx-users] SPC model hydrogen bonding João Henriques
[gmx-users] Atom HG1 not found in rtp database... Vishwambhar Bhandare
- [gmx-users] Atom HG1 not found in rtp database... RAHUL SURESH
- [gmx-users] Atom HG1 not found in rtp database... Mark Abraham
[gmx-users] umbrella sampling rose rahmani
[gmx-users] Parameter file, regarding RAHUL SURESH
- [gmx-users] Parameter file, regarding Mark Abraham
  - [gmx-users] Parameter file, regarding RAHUL SURESH
[gmx-users] The sum of the two largest charge group radii (X) is larger than rlist Faezeh Pousaneh
- [gmx-users] The sum of the two largest charge group radii (X) is larger than rlist Justin Lemkul
  - [gmx-users] The sum of the two largest charge group radii (X) is larger than rlist Faezeh Pousaneh
    - [gmx-users] The sum of the two largest charge group radii (X) is larger than rlist Faezeh Pousaneh
    - [gmx-users] The sum of the two largest charge group radii (X) is larger than rlist Justin Lemkul
    - [gmx-users] The sum of the two largest charge group radii (X) is larger than rlist Faezeh Pousaneh
[gmx-users] determining the unbinding path abhisek Mondal
- [gmx-users] determining the unbinding path Justin Lemkul
[gmx-users] How to run MD with longer recording interval to reduce the file size? ZHANG Cheng
- [gmx-users] How to run MD with longer recording interval to reduce the file size? Qinghua Liao
- [gmx-users] How to run MD with longer recording interval to reduce the file size? ZHANG Cheng
  - [gmx-users] How to run MD with longer recording interval to reduce the file size? Justin Lemkul
  - [gmx-users] How to run MD with longer recording interval to reduce the file size? Qinghua Liao
  - [gmx-users] How to run MD with longer recording interval to reduce the file size? ZHANG Cheng
    - [gmx-users] How to run MD with longer recording interval to reduce the file size? Qinghua Liao
[gmx-users] Can't read xxx bytes of pullf.xvg to compute checksum Diez Fernandez, Amanda
- [gmx-users] Can't read xxx bytes of pullf.xvg to compute checksum Justin Lemkul
[gmx-users] Topology for Charmm, regarding RAHUL SURESH
[gmx-users] Complication of errors, .itp file regarding RAHUL SURESH
- [gmx-users] Complication of errors, .itp file regarding RAHUL SURESH
- [gmx-users] Complication of errors, .itp file regarding Justin Lemkul
  - [gmx-users] Complication of errors, .itp file regarding RAHUL SURESH
    - [gmx-users] Complication of errors, .itp file regarding Justin Lemkul
    - [gmx-users] Complication of errors, .itp file regarding RAHUL SURESH
[gmx-users] WHAM rose rahmani
- [gmx-users] WHAM Roja
- [gmx-users] WHAM Rose
  - [gmx-users] WHAM Justin Lemkul
    - [gmx-users] WHAM Alex
    - [gmx-users] WHAM rose rahmani
    - [gmx-users] WHAM João Henriques
    - [gmx-users] WHAM Alex
    - [gmx-users] WHAM Rose
[gmx-users] Measuring distance to the nearest image Anthony Nash
- [gmx-users] Measuring distance to the nearest image Anthony Nash
  - [gmx-users] Measuring distance to the nearest image Peter Kroon
    - [gmx-users] Measuring distance to the nearest image Alexandr Nasedkin
    - [gmx-users] Measuring distance to the nearest image Anthony Nash
- [gmx-users] Measuring distance to the nearest image Mark Abraham
  - [gmx-users] Measuring distance to the nearest image Anthony Nash
    - [gmx-users] Measuring distance to the nearest image Mark Abraham
    - [gmx-users] Measuring distance to the nearest image Anthony Nash
    - [gmx-users] Measuring distance to the nearest image Mark Abraham
[gmx-users] set computer time on REMD simulation YanhuaOuyang
- [gmx-users] set computer time on REMD simulation Qinghua Liao
  - [gmx-users] set computer time on REMD simulation YanhuaOuyang
[gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
[gmx-users] PME computation for triclinic box Mariia Savenko
[gmx-users] Free energy perturbation - table extension and blowing system Krzysztof Makuch
- [gmx-users] Free energy perturbation - table extension and blowing system Krzysztof Makuch
[gmx-users] g_mindsit contact analysis soumadwip ghosh
[gmx-users] PROTEIN FOLDING Neha Gupta
- [gmx-users] PROTEIN FOLDING RAHUL SURESH
- [gmx-users] PROTEIN FOLDING RAHUL SURESH
  - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING RAHUL SURESH
    - [gmx-users] PROTEIN FOLDING RAHUL SURESH
    - [gmx-users] PROTEIN FOLDING Aman Deep
    - [gmx-users] PROTEIN FOLDING João Henriques
    - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING João Henriques
    - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING RAHUL SURESH
    - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING Justin Lemkul
    - [gmx-users] PROTEIN FOLDING Lakshman Ji Verma
    - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING Justin Lemkul
    - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING Alexandr Nasedkin
    - [gmx-users] PROTEIN FOLDING Justin Lemkul
    - [gmx-users] PROTEIN FOLDING Neha Gupta
    - [gmx-users] PROTEIN FOLDING Justin Lemkul
[gmx-users] PROTEIN FOLDING Nikhil Maroli
- [gmx-users] PROTEIN FOLDING Neha Gupta
[gmx-users] GROMACS 2018 third beta release Mark Abraham
[gmx-users] Umbrella sampling spss4 at iacs.res.in
- [gmx-users] Umbrella sampling Dhaniram Mahato
  - [gmx-users] Umbrella sampling spss4 at iacs.res.in
  - [gmx-users] Umbrella sampling spss4 at iacs.res.in
    - [gmx-users] Umbrella sampling Jefferies D.F.
    - [gmx-users] Umbrella sampling Mark Abraham
    - [gmx-users] Umbrella sampling spss4 at iacs.res.in
    - [gmx-users] Umbrella sampling Jefferies D.F.
    - [gmx-users] Umbrella sampling spss4 at iacs.res.in
[gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
- [gmx-users] Grompp error : Incorrect number of parameters Justin Lemkul
  - [gmx-users] Grompp error : Incorrect number of parameters Mark Abraham
  - [gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
    - [gmx-users] Grompp error : Incorrect number of parameters Mark Abraham
    - [gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
    - [gmx-users] Grompp error : Incorrect number of parameters Mark Abraham
    - [gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
    - [gmx-users] Grompp error : Incorrect number of parameters Alex
    - [gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
    - [gmx-users] Grompp error : Incorrect number of parameters RAHUL SURESH
    - [gmx-users] Grompp error : Incorrect number of parameters Mark Abraham
[gmx-users] computing electric field for triclinic system Mariia Savenko
- [gmx-users] computing electric field for triclinic system Fakhar Alam
  - [gmx-users] computing electric field for triclinic system Fakhar Alam
- [gmx-users] computing electric field for triclinic system Mark Abraham
  - [gmx-users] computing electric field for triclinic system Mariia Savenko
[gmx-users] Gromacs 2018 beta: g_membed broken? Daniel Bauer
- [gmx-users] Gromacs 2018 beta: g_membed broken? Mark Abraham
[gmx-users] Semipermeable membrane and pull code/flat bottom restraints for large molecules. Thomas Underwood
- [gmx-users] Semipermeable membrane and pull code/flat bottom restraints for large molecules. Mark Abraham
[gmx-users] Contact maps using COM distance Roshan Shrestha
[gmx-users] Dynamic selection of a shell in a trajectory Matteo Busato
- [gmx-users] Dynamic selection of a shell in a trajectory João Henriques
  - [gmx-users] Dynamic selection of a shell in a trajectory Mark Abraham
[gmx-users] Modify source file for specific use deepak bapat
- [gmx-users] Modify source file for specific use Mark Abraham
  - [gmx-users] Modify source file for specific use deepak bapat
[gmx-users] GROMACS 5.1.5 released - final release of that series Mark Abraham
[gmx-users] warning:Long Bond Saleheh Heidari
- [gmx-users] warning:Long Bond Justin Lemkul
[gmx-users] MPI-specific compile problem finding fftwf_plan_r2r_1d in libfftw3f.a -- undefined reference to `_intel_fast_memset' Christopher Neale
[gmx-users] MPI-specific compile problem finding fftwf_plan_r2r_1d in libfftw3f.a -- undefined reference to `_intel_fast_memset' Christopher Neale
[gmx-users] Volume-Temperature Replica Exchange Daniel Kozuch
- [gmx-users] Volume-Temperature Replica Exchange Mark Abraham
[gmx-users] Simulation of aggregated proteins RAHUL SURESH
- [gmx-users] Simulation of aggregated proteins João Henriques
  - [gmx-users] Simulation of aggregated proteins Mark Abraham
[gmx-users] to post on mailing list Ladan Mafakhe
[gmx-users] Regarding protocol of g_lie module neha chaudhary
- [gmx-users] Regarding protocol of g_lie module David van der Spoel
[gmx-users] The sign of deuterium order parameter calculated by g_order Jason Zhu
- [gmx-users] The sign of deuterium order parameter calculated by g_order Justin Lemkul
  - [gmx-users] The sign of deuterium order parameter calculated by g_order Thomas Piggot
[gmx-users] Fatal error from grommp in gromacs 5.0.4 James
- [gmx-users] Fatal error from grommp in gromacs 5.0.4 Mark Abraham
- [gmx-users] Fatal error from grommp in gromacs 5.0.4 Alexandr Nasedkin
[gmx-users] protein peptide interaction MD
- [gmx-users] protein peptide interaction Justin Lemkul
  - [gmx-users] protein peptide interaction MD
[gmx-users] Fatal error in grompp James
[gmx-users] analyzing docking + MD results MD
- [gmx-users] analyzing docking + MD results Mark Abraham
  - [gmx-users] analyzing docking + MD results MD
    - [gmx-users] analyzing docking + MD results Mark Abraham
    - [gmx-users] analyzing docking + MD results MD
    - [gmx-users] analyzing docking + MD results MD
[gmx-users] Fatal error from grommp in gromacs 5.0.4 James
[gmx-users] Ris: analyzing docking + MD results andrea.spitaleri at iit.it
[gmx-users] Osmotic Pressure Calculations and fixed reference values of walls Mandar Kulkarni
- [gmx-users] Osmotic Pressure Calculations and fixed reference values of walls Justin Lemkul
[gmx-users] regarding calculation of intra-residue energy Saumyak Mukherjee
- [gmx-users] regarding calculation of intra-residue energy Justin Lemkul
[gmx-users] GROMACS 2018 first release candidate Mark Abraham
[gmx-users] dielectric constant effect on protein, dna, water interface Sarath Chandra
[gmx-users] More dihedrals generated than provided in the force field & "No default Proper Dih. types" as a result Timofey Tyugashev
- [gmx-users] More dihedrals generated than provided in the force field & "No default Proper Dih. types" as a result Justin Lemkul
[gmx-users] Strange energy values with GMX 5.1, PME and Verlet Diana Lousa
- [gmx-users] Strange energy values with GMX 5.1, PME and Verlet Mark Abraham
[gmx-users] More dihedrals generated than provided in the, force field & "No default Proper Dih. types" as a result Timofey Tyugashev
[gmx-users] Extending MD simulations Pandya, Akash
- [gmx-users] Extending MD simulations Justin Lemkul
- [gmx-users] Extending MD simulations Qinghua Liao
[gmx-users] Structures after Dihedral principle component analysis(dPCA) Sundari
[gmx-users] Non bonded parameters Anjana Jayasinghe
- [gmx-users] Non bonded parameters Justin Lemkul
  - [gmx-users] Non bonded parameters Anjana Jayasinghe
    - [gmx-users] Non bonded parameters Justin Lemkul
[gmx-users] Structures after Dihedral principle component analysis (dPCA) soumadwip ghosh
[gmx-users] Structures after Dihedral principle component analysis (dPCA) soumadwip ghosh
[gmx-users] Extending MD simulations soumadwip ghosh
[gmx-users] Problems with Energy Minimization in Solvated Ligand Toan Nguyen
- [gmx-users] Problems with Energy Minimization in Solvated Ligand Justin Lemkul
  - [gmx-users] Problems with Energy Minimization in Solvated Ligand Toan Nguyen
    - [gmx-users] Problems with Energy Minimization in Solvated Ligand Justin Lemkul
    - [gmx-users] Problems with Energy Minimization in Solvated Ligand Toan Nguyen
    - [gmx-users] Problems with Energy Minimization in Solvated Ligand Justin Lemkul
    - [gmx-users] Problems with Energy Minimization in Solvated Ligand Toan Nguyen
    - [gmx-users] Problems with Energy Minimization in Solvated Ligand Billy Williams-Noonan
    - [gmx-users] Problems with Energy Minimization in Solvated Ligand Justin Lemkul
[gmx-users] VMD Compatibility Question Ethan Hsiao
- [gmx-users] VMD Compatibility Question Alex
[gmx-users] Regarding finding a ion/molecule in forecefield Dilip H N
- [gmx-users] Regarding finding a ion/molecule in forecefield Justin Lemkul
  - [gmx-users] Regarding finding a ion/molecule in forecefield Dilip H N
    - [gmx-users] Regarding finding a ion/molecule in forecefield Justin Lemkul
[gmx-users] Issue regarding MN+2 Amir Zeb
- [gmx-users] Issue regarding MN+2 Justin Lemkul
  - [gmx-users] Issue regarding MN+2 Amir Zeb
    - [gmx-users] Issue regarding MN+2 Justin Lemkul
    - [gmx-users] Issue regarding MN+2 Amir Zeb
    - [gmx-users] Issue regarding MN+2 RAHUL SURESH
    - [gmx-users] Issue regarding MN+2 Alexandr Nasedkin
    - [gmx-users] Issue regarding MN+2 Justin Lemkul
[gmx-users] How do I calculate per-atom per-frame SASA? Denny Bromley
[gmx-users] lipid bilayer simulation-simulation setup Mohsen Ramezanpour
[gmx-users] question s.ghasemlou
- [gmx-users] question RAHUL SURESH
  - [gmx-users] question s.ghasemlou
- [gmx-users] question Justin Lemkul
  - [gmx-users] question RAHUL SURESH
    - [gmx-users] question Mark Abraham
[gmx-users] question Nikhil Maroli
- [gmx-users] question s.ghasemlou
- [gmx-users] question Nikhil Maroli
[gmx-users] widom TPI insertion deepak bapat
[gmx-users] pressure coupling kordzadeh at aut.ac.ir
- [gmx-users] pressure coupling Justin Lemkul
[gmx-users] determine surface tension kordzadeh at aut.ac.ir
[gmx-users] determine surface tension kordzadeh at aut.ac.ir

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Archived on: Sun Dec 31 16:20:12 CET 2017

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