May 2003 Archives by thread
Starting: Thu May 1 00:05:01 CEST 2003
Ending: Sat May 31 16:30:01 CEST 2003
Messages: 399
- [gmx-users] Arithmetic exception: tabscale=0 (again)
Lianqing Zheng
- [gmx-users] periodic boundary condition
Dallas Warren
- [gmx-users] file too big?
Anton Feenstra
- [gmx-users] make_ndx may contain a bug?
Paul Barrett
- [gmx-users] SHUFFLING tutorial
Anton Feenstra
- [gmx-users] TFE-water simulations
Anton Feenstra
- [gmx-users] sridhar at RERUNNING INTERRUPTED MD SIMULATION
Anton Feenstra
- [gmx-users] sridhar at dummy hydrogens in pdb2gmx.
Anton Feenstra
- [gmx-users] Gromacs vs. Ab initio charges
Ing. Vojtěch Spiwok
- [gmx-users] Position restraints for two groups
Anton Feenstra
- [gmx-users] g_chi
Anton Feenstra
- [gmx-users] some abbreviations
Alan Wilter Sousa da Silva
- [gmx-users] Demo
Nagy, Peter I.
- [gmx-users] Question about CCl4 box!
PeiQuan Chen
- [gmx-users] Re:Question about CCl4 box!
³ÂÅæÈ«
- [gmx-users] Re: g_chi again
Graham Smith
- [gmx-users] Re: Question about CCl4 box!
PeiQuan Chen
- [gmx-users] Re: Question about CCl4 box!
David
- [gmx-users] LINCS WARNING: How to correct LINCS WARNINGs
Mr.Sridhar
- [gmx-users] (no subject)
PeiQuan Chen
- [gmx-users] Re: Question about CCl4 box!
PeiQuan Chen
- [gmx-users] Re: Question about CCl4 box!
David
- [gmx-users] Re: gmx-users digest, Vol 1 #761 - 4 msgs
PeiQuan Chen
- [gmx-users] How to get the opls vdw parameters of Ag+ ?
PeiQuan Chen
- [gmx-users] failed to make rtab.xvg (arithmetic exception)
Lianqing Zheng
- [gmx-users] ngmx for 3.1.5_pre
Kurt Seefeldt
- [gmx-users] statistics of MD
Evka Stefanekova
- [gmx-users] PME accuracy
Vincent Ballenegger
- [gmx-users] Query!
Swetha Vijayakrishan
- [gmx-users] query!
Swetha Vijayakrishan
- [gmx-users] query!
Swetha Vijayakrishan
- [gmx-users] g_cluster[output]
Osmany Guirola Cruz
- [gmx-users] COMB ED
Ruben Martinez Buey
- [gmx-users] Water residence time
Andrea Bernini
- [gmx-users] dihedrals
Giorgos Karvounis
- [gmx-users] how to separate trajectory into individual pdbfiles.
Mr.Sridhar
- [gmx-users] methanol-water box
alexander yakovenko
- [gmx-users] N-terminal hydrogen problem
Paul Barrett
- [gmx-users] save protein+ water shell
Dmitry Kovalsky
- [gmx-users] editing parameters
Regina R. Monaco, Ph.D.
- [gmx-users] Re: g_msd : input files question (David)
Nuno Ricardo Loureiro Ferreira
- [gmx-users] editing parameters
Paul Barrett
- [gmx-users] N-terminal hydrogen problem
Paul Barrett
- [gmx-users] Summary: N-terminal hydrogen problem
Paul Barrett
- [gmx-users] PME problem
Arvid Soederhaell
- [gmx-users] PME problem
Paul Barrett
- [gmx-users] rigid body
Tatiana Hushcha
- [gmx-users] rigid body
Tatiana Hushcha
- [gmx-users] methanol-water box
Alexander
- [gmx-users] PME accuracy
Berk Hess
- [gmx-users] fftw 3 install error (and gromacs install) on OSX 10.2.5
Dr. Daniel James White PhD
- [gmx-users] NAMD2/VMD vs Gromacs analysis tools
Leon Salgado
- [gmx-users] temperature explosion...
Giorgos Karvounis
- [gmx-users] Fourier transformations of protein motions
Ing. Vojtěch Spiwok
- [gmx-users] Creating a layer bigger than one PBC
Marc Baaden
- [gmx-users] Re: gmx-users digest, Vol 1 #758 - 9 msgs
Mr.Sridhar
- [gmx-users] Extracting PDB files from .trr trajectory file
Mr.Sridhar
- [gmx-users] HELP: molecule rotation!
Giacomo Fiorin
- [gmx-users] energy terms
quantix1 at gmx.de
- [gmx-users] Charge of Ethylene glycol
Osmair Vital de Oliveira
- [gmx-users] Charge of Ethylene glycol
Osmair Vital de Oliveira
- [gmx-users] Re: dmf or dmso
David van der Spoel
- [gmx-users] re: temp explosion and shifted potentails
George Karvounis
- [gmx-users] Gromacs on Windows
Paul Barrett
- [gmx-users] Getting started / tutorial speptide example g_energy and xmgrace
Dr. Daniel James White PhD
- [gmx-users] Only triclinic boxes
Rahul Banerjee
- [gmx-users] Getting started / tutorial speptide example g_energy and xmgrace
DaJustice1 at aol.com
- [gmx-users] un-coupled simulations and traj recovery
George Karvounis
- [gmx-users] Metal ions in peptides/proteins
Attila Borics
- [gmx-users] Does gromacs use group-based charge groups in the PME method?
S. W. Chiu
- [gmx-users] ligand isomerisation
Chris Shaw
- [gmx-users] LIE interaction energy calculations
Anton Feenstra
- [gmx-users] un-coupled simulations and traj recovery
Giorgos Karvounis
- [gmx-users] tutorial speptide
Dr. Daniel James White PhD
- [gmx-users] un-coupled simulations and traj recovery
Giorgos Karvounis
- [gmx-users] rerun of trajectory!
Swetha Vijayakrishan
- [gmx-users] rerun of trajectory!
Paul Barrett
- [gmx-users] OPLS and free energy runs
Rainer Boeckmann
- [gmx-users] grompp using cpp in MacOSX/darwin
Dr. Daniel James White PhD
- [gmx-users] Protein-drug tutorial
chandran karunakaran
- [gmx-users] editconf and genbox, not enough waters, box not correct size
Dr. Daniel James White PhD
- [gmx-users] Weird PME problem
DaJustice1 at aol.com
- [gmx-users] protein drug tutorial
John Kerrigan
- [gmx-users] g_msd and pbc
emombel at nimr.mrc.ac.uk
- [gmx-users] Re: rerun of trajectory
Swetha Vijayakrishan
- [gmx-users] Re: RE: GROMACS TUTORIAL
John Kerrigan
- [gmx-users] Re: rerun of trajectory
Dallas Warren
- [gmx-users] non-symmetric matrix and too large first values
medeawan at sohu.com
- [gmx-users] Re: rerun of trajectory
Paul Barrett
- [gmx-users] non-symmetric matrix and too large first values
medeawan at sohu.com
- [gmx-users] cpp default location for mac osX in .mdp files
Dr. Daniel James White PhD
- [gmx-users] Re: cpp default location for mac osX in .mdp files
Ing. Vojtěch Spiwok
- [gmx-users] adding atom types
Vivek Raut
- [gmx-users] torsion potential
B. Nick
- [gmx-users] Desktop computer for simulations and visualisation
Dallas Warren
- [gmx-users] non-symmetric matrix and too large first values
medeawan at sohu.com
- [gmx-users] sridhar: How to include topologies for unusual/phosphorylated residues occurring within the protein chain.
Paul Barrett
- [gmx-users] Re: non-symmetric matrix and too large first values--my mdp files
Bert de Groot
- [gmx-users] Re: problem with g_anaeig
Bert de Groot
- [gmx-users] torsion potential again
B. Nick
- [gmx-users] Protein-drug tutorial
muthu12 at cox.net
- [gmx-users] How to print out vdw-14 energy terms for each pair in minimization?
Ruhong Zhou
- [gmx-users] speeding up correlation functions?
David
- [gmx-users] Re: problem with g_anaeig
Berk Hess
- [gmx-users] Problems fixed in revision 3.1.4
Fan Hao
- [gmx-users] Problems fixed in revision 3.1.4
Berk Hess
- [gmx-users] 3-site methanol model
Nuno Ricardo Loureiro Ferreira
- [gmx-users] gromacs to dcd/mmtk
Zoe Cournia
- [gmx-users] Re: gromacs to dcd/mmtk
Nuno Ricardo Loureiro Ferreira
- [gmx-users] Max diversity calculation
alexander yakovenko
- [gmx-users] GROMACS in parallel on Dual CPU Linux machine
Pratul K. Agarwal
- [gmx-users] GROMACS in parallel on Dual CPU Linux machine
Pratul K. Agarwal
- [gmx-users] the interaction energy between the ligand and the residue
Chunying Niu
- [gmx-users] dcd to gro!
Swetha Vijayakrishan
- [gmx-users] how to deal with protein rotation
Jinzhi Tan
- [gmx-users] dcd to gro!
Nuno R. L. Ferreira
- [gmx-users] Re: Re:Max diversity calculation
Alexander
- [gmx-users] How to use the dummy atom?
PeiQuan Chen
- [gmx-users] How to use the dummy atom?
Anton Feenstra
- [gmx-users] Three solvent boxs upload to gromacs topologies(CCl4 CHCl3 CH2Cl2)!
PeiQuan Chen
- [gmx-users] g_msd (option -trestart, segmentation fault with -mol)
Vincent Ballenegger
- [gmx-users] protein rotation in version 3.0.5
Jinzhi Tan
- [gmx-users] Re: How to use the dummy atom?
PeiQuan Chen
- [gmx-users] Re: How to use the dummy atom?
PeiQuan Chen
- [gmx-users] Is it possible to turn off protein-water interaction?
Ruhong Zhou
- [gmx-users] protein rotation!
Jinzhi Tan
- [gmx-users] Re: How to use the dummy atom?
David
- [gmx-users] pdb2gmx problem
Vivek Raut
- [gmx-users] Re: How to use the dummy atom?
Anton Feenstra
- [gmx-users] Re: How to use the dummy atom?
Daan van Aalten
- [gmx-users] Re: gmx-users digest, Vol 1 #464 - 2 msgs
George Patargias DPhil
- [gmx-users] PMF with the pulll code
George Patargias DPhil
- [gmx-users] PRODRG problem
Osmany Guirola Cruz
- [gmx-users] 3-site methanol model (Re: C. Freudenberger)
Nuno R. L. Ferreira
- [gmx-users] Re: How to use the dummy atom?
PeiQuan Chen
- [gmx-users] bonded pairlist
Fan Hao
- [gmx-users] FAQ: File too big
Oliver Beckstein
- [gmx-users] PMF with the pulll code
Justin MacCallum
- [gmx-users] Re: How to use the dummy atom?
Dallas Warren
- [gmx-users] fatty acid monolayer - pressure vs. area
McMullen, Roger L
- [gmx-users] how to turn off mass weighted MSD in g_msd?
Vincent Ballenegger
- [gmx-users] Athlon Instabilities
Stefano Piana
- [gmx-users] fatty acid monolayer - surface pressure isotherm
McMullen, Roger L
- [gmx-users] problem with specbonds
quantix1 at gmx.de
- [gmx-users] strategy of clustering 10nodes ?
Taeho Kim
- [gmx-users] Problems with g_density...
curtchr1 at iit.edu
- [gmx-users] fatty acid monolayer - surface pressure isotherm
McMullen, Roger L
- [gmx-users] Re: [gmx-users]mdrun crashed on upgraded Dual 1.0G Mac OS X
taeho.kim at utoronto.ca
- [gmx-users] Targetted MD in Gromacs?
Jinzhi Tan
- [gmx-users] Topology for ligand covalently attached to DNA molecule
Mr.Sridhar
- [gmx-users] Re: Athlon Instabilities
Ing. Vojtěch Spiwok
- [gmx-users] Re: [gmx-users]mdrun crashed on upgraded Dual 1.0GMac OS X
Taeho Kim
- [gmx-users] Re: [gmx-users]mdrun crashed on upgraded Dual1.0GMac OS X
Taeho Kim
- [gmx-users] Installation problems on Mac OSX 10.2.6
Lynn F. Ten Eyck
- [gmx-users] Installation problems on Mac OSX 10.2.6
Taeho Kim
- [gmx-users] How to extract extract dV/dlambda data with g_energy??
PeiQuan Chen
- [gmx-users] gromos96 parameters
Pedro Alexandre Lapido Loureiro
- [gmx-users] Bonds energies calculation
Alexander
- [gmx-users] Bilayers
Osmany Guirola Cruz
- Fwd: [gmx-users] gromos96 parameters
S. W. Chiu
- [gmx-users] dmso solvent
aswin narain
- [gmx-users] Error downloading Gromacs Benchmark
Andreas Kukol
- [gmx-users] DMSO solvent
aswin narain
- [gmx-users] hbonds in DNA and RNA
brynza
- [gmx-users] hbonds in DNA and RNA
brynza
- [gmx-users] gromos96 parameters
Pedro Alexandre Lapido Loureiro
- [gmx-users] DNA parameters
aswin narain
- [gmx-users] pbc
aswin narain
- [gmx-users] rvdw-switch
sadhna
- [gmx-users] pbc
aswin narain
- [gmx-users] pbc
aswin narain
- [gmx-users] presence of hydrogens
Jocelyne Vreede
- [gmx-users] D-form amino acids
Regina R. Monaco, Ph.D.
- [gmx-users] removing water molecules
s8026264
- [gmx-users] MDP options for CCL4 solvent
Venkat Ramanan K
- [gmx-users] MDP options for CCL4 solvent
Venkat Ramanan K
- [gmx-users] re:MDP options for CCL4 solvent
PeiQuan Chen
- [gmx-users] removing waters from a peptide
kia balali
- [gmx-users] Energy too high for free energy
Ing. Vojtěch Spiwok
- Fwd: [gmx-users] D-form amino acids
Regina R. Monaco, Ph.D.
- [gmx-users] settle problem
Valentin Gogonea
- [gmx-users] MPI at cluster
Taeho Kim
- [gmx-users] Re: gmx-users digest, Vol 1 #804 - 10 msgs
Regina R. Monaco, Ph.D.
- [gmx-users] Floating point exeption in xtc file
Dmitry Kovalsky
- [gmx-users] cluster newbie --> gromacs + openmosix ?
Mike Grommet
- [gmx-users] mdrun Segmentation fault (after install make_hole_mdrun)
Minghu Song
- [gmx-users] [Fwd: A bug in gromacs]
David
- [gmx-users] Re: atom types, residue info for D-amino acids
Daan van Aalten
Last message date:
Sat May 31 16:30:01 CEST 2003
Archived on: Thu Nov 14 12:00:10 CET 2013
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