August 2015 Archives by thread

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Starting: Sat Aug 1 01:15:07 CEST 2015
Ending: Mon Aug 31 19:01:03 CEST 2015
Messages: 725

• [gmx-users] Error:EM did not converge while using polarizable ion   折晓会
  • [gmx-users] Error:EM did not converge while using polarizable ion   Justin Lemkul
    • [gmx-users] Error:EM did not converge while using polarizable ion   折晓会
      • [gmx-users] Error:EM did not converge while using polarizable ion   Justin Lemkul
      • [gmx-users] Error:EM did not converge while using polarizable ion   折晓会
      • [gmx-users] Error:EM did not converge while using polarizable ion   Justin Lemkul
      • [gmx-users] Error:EM did not converge while using polarizable ion   Vitaly V. Chaban
      • [gmx-users] Error:EM did not converge while using polarizable ion   Justin Lemkul
      • [gmx-users] Error:EM did not converge while using polarizable ion   折晓会
      • [gmx-users] Error:EM did not converge while using polarizable ion   Justin Lemkul
      • [gmx-users] Error:EM did not converge while using polarizable ion   折晓会
      • [gmx-users] Error:EM did not converge while using polarizable ion   Justin Lemkul
      • [gmx-users] Error:EM did not converge while using polarizable ion   折晓会
  • [gmx-users] Error:EM did not converge while using polarizable ion   姚懿
• [gmx-users] Building a Larger Liquid Phase - Truncate 'Vacuum'   Justin Lemkul
  • [gmx-users] Building a Larger Liquid Phase - Truncate 'Vacuum'   Elton Carvalho
• [gmx-users] Fwd: DFTB implementation   Justin Lemkul
  • [gmx-users] Fwd: DFTB implementation   Zhenyu Meng
    • [gmx-users] Fwd: DFTB implementation   Vitaly V. Chaban
• [gmx-users] g_rdf problem   Zhenyu Meng
• [gmx-users] About airtual site tutorial   sujithkakkat .
• [gmx-users] Regarding-virtual-sites-tutorial   sujithkakkat .
  • [gmx-users] Regarding-virtual-sites-tutorial   Justin Lemkul
    • [gmx-users] Regarding-virtual-sites-tutorial   sujithkakkat .
      • [gmx-users] Regarding-virtual-sites-tutorial   Justin Lemkul
• [gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong?   asaffarhi at post.tau.ac.il
• [gmx-users] MD run complete but ligand not showing up   su
  • [gmx-users] MD run complete but ligand not showing up   Justin Lemkul
• [gmx-users] Nitrate ion doesnt remain planar after md run   Meena Singh
  • [gmx-users] Nitrate ion doesnt remain planar after md run   Aishwary Shivgan
    • [gmx-users] Nitrate ion doesnt remain planar after md run   Mark Abraham
      • [gmx-users] Nitrate ion doesnt remain planar after md run   Mark Abraham
• [gmx-users] essential dynamics and flooding   Oskar Berntsson
  • [gmx-users] essential dynamics and flooding   Kutzner, Carsten
• [gmx-users] Fwd: DFTB implementation (Vitaly V. Chaban)   Groenhof, Gerrit
• [gmx-users] Study of sampling of villin headpiece   Mario Fernández Pendás
  • [gmx-users] Study of sampling of villin headpiece   Mark Abraham
    • [gmx-users] Study of sampling of villin headpiece   Mario Fernández Pendás
• [gmx-users] gromacs.org_gmx-users Digest, Vol 136, Issue 6   Meena Singh
• [gmx-users] assigning two ligand in gromacs with amber99sb force filed   SAKO MIRZAIE
  • [gmx-users] assigning two ligand in gromacs with amber99sb force filed   Justin Lemkul
• [gmx-users] High speed performance   Asmaa El khodary
  • [gmx-users] High speed performance   Kutzner, Carsten
  • [gmx-users] High speed performance   Asmaa El khodary
    • [gmx-users] High speed performance   Szilárd Páll
      • [gmx-users] High speed performance   Asmaa El khodary
      • [gmx-users] High speed performance   Kutzner, Carsten
      • [gmx-users] High speed performance   Asmaa El khodary
• [gmx-users] getting .gro file   Mehrnoosh Hazrati
  • [gmx-users] getting .gro file   Mark Abraham
    • [gmx-users] getting .gro file   Vitaly V. Chaban
• [gmx-users] terminal patches for cyclic peptide   Nikhil Maroli
  • [gmx-users] terminal patches for cyclic peptide   Mark Abraham
• [gmx-users] Water_polarization error   amit sharma
  • [gmx-users] Water_polarization error   Mark Abraham
• [gmx-users] Protein-Ligand   su
  • [gmx-users] Protein-Ligand   Justin Lemkul
• [gmx-users] gmx distance   Alex
  • [gmx-users] gmx distance   Mark Abraham
    • [gmx-users] gmx distance   Alex
      • [gmx-users] gmx distance   Justin Lemkul
      • [gmx-users] gmx distance   Alex
• [gmx-users] Ion self-interaction energy?   Leandro Bortot
  • [gmx-users] Ion self-interaction energy?   Justin Lemkul
    • [gmx-users] Ion self-interaction energy?   Leandro Bortot
      • [gmx-users] Ion self-interaction energy?   Rodney Versace Babilonia
• [gmx-users] how to calculate ESP at certain position   Zhenyu Meng
  • [gmx-users] how to calculate ESP at certain position   André Farias de Moura
    • [gmx-users] how to calculate ESP at certain position   Zhenyu Meng
      • [gmx-users] how to calculate ESP at certain position   André Farias de Moura
• [gmx-users] Regarding g_sham   Naba
• [gmx-users] Regarding g_sham   Naba
• [gmx-users] tabulated bonded interaction functions   Liz Bell
  • [gmx-users] tabulated bonded interaction functions   Liz Bell
    • [gmx-users] tabulated bonded interaction functions   Mark Abraham
      • [gmx-users] tabulated bonded interaction functions   Liz Bell
      • [gmx-users] tabulated bonded interaction functions   Mark Abraham
      • [gmx-users] tabulated bonded interaction functions   Liz Bell
      • [gmx-users] tabulated bonded interaction functions   Peter Kroon
  • [gmx-users] tabulated bonded interaction functions - problem with the forces   Liz Bell
    • [gmx-users] tabulated potential - problem   Liz Bell
      • [gmx-users] tabulated potential - problem   Mark Abraham
• [gmx-users] g_hbond   jwillcox at andrew.cmu.edu
  • [gmx-users] g_hbond   Justin Lemkul
• [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
  • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
    • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Sharapa
      • [gmx-users] Solvatebox from itp GAFF organic solvents and amber solute.   Justin Lemkul
• [gmx-users] Water_polarization error   Mark Abraham
• [gmx-users] PBC in a closed box.   Rodney Versace Babilonia
  • [gmx-users] PBC in a closed box.   André Farias de Moura
    • [gmx-users] PBC in a closed box.   Rodney Versace Babilonia
• [gmx-users] g_mmpbsa   elham tazikeh
  • [gmx-users] g_mmpbsa   Leandro Bortot
• [gmx-users] g_mmpbsa   elham tazikeh
  • [gmx-users] g_mmpbsa   Leandro Bortot
• [gmx-users] Inorganic Material Simulations   ANAND AMITKUMAR Dharia
  • [gmx-users] Inorganic Material Simulations   Justin Lemkul
    • [gmx-users] Inorganic Material Simulations   ANAND AMITKUMAR Dharia
      • [gmx-users] Inorganic Material Simulations   Alex
• [gmx-users] calculating single atom changes along the trajectory as a measure of distance   PAVAN PAYGHAN
  • [gmx-users] calculating single atom changes along the trajectory as a measure of distance   Tsjerk Wassenaar
    • [gmx-users] calculating single atom changes along the trajectory as a measure of distance   Michael Cristòfol Clough
• [gmx-users] how to calculate ESP at certain position (Zhenyu Meng)   Groenhof, Gerrit
  • [gmx-users] how to calculate ESP at certain position (Zhenyu Meng)   Zhenyu Meng
• [gmx-users] 1, 3-dipalmitoyl-2-oleoyl parameterization based on Berger lipid parameters   Anna Möller
• [gmx-users] forming disulfide linkage between two chains   tasneem kausar
  • [gmx-users] forming disulfide linkage between two chains   Justin Lemkul
• [gmx-users] Force-field bias???   SAPNA BORAH
  • [gmx-users] Force-field bias???   Vitaly V. Chaban
  • [gmx-users] Force-field bias???   Justin Lemkul
    • [gmx-users] Force-field bias???   Smith, Micholas D.
      • [gmx-users] Force-field bias???   SAPNA BORAH
      • [gmx-users] Force-field bias???   Smith, Micholas D.
      • [gmx-users] Force-field bias???   Justin Lemkul
      • [gmx-users] Force-field bias???   SAPNA BORAH
      • [gmx-users] Force-field bias???   Antonio Baptista
• [gmx-users] gromacs.org_gmx-users Digest, Vol 136, Issue 19   PAVAN PAYGHAN
• [gmx-users] re: calculating single atom changes along the trajectory as a measure of distance   Tsjerk Wassenaar
• [gmx-users] SOURCE CODE FOR SOLVATE AND CONVERT-TPR   Akash Deep Biswas
  • [gmx-users] SOURCE CODE FOR SOLVATE AND CONVERT-TPR   Justin Lemkul
• [gmx-users] genbox, solvate, insert-molecules   Joseph Dufresne
  • [gmx-users] genbox, solvate, insert-molecules   Justin Lemkul
• [gmx-users] Hard Wall Boundary   ANAND AMITKUMAR Dharia
  • [gmx-users] Hard Wall Boundary   Justin Lemkul
• [gmx-users] how salt concentration influence the cutoff distances for hbond and salt bridges   LW
  • [gmx-users] how salt concentration influence the cutoff distances for hbond and salt bridges   Smith, Micholas D.
• [gmx-users] Question about generating top file with different angle functions.   Zhenhai Li
  • [gmx-users] Question about generating top file with different angle functions.   Aishwary Shivgan
• [gmx-users] Problem with positive total energy   Sunil Ghimire
  • [gmx-users] Problem with positive total energy   Alex
  • [gmx-users] Problem with positive total energy   Sunil Ghimire
    • [gmx-users] Problem with positive total energy   Alex
• [gmx-users] Martini v2.2 and water freezing   Khuong Truong Gia
  • [gmx-users] Martini v2.2 and water freezing   Peter Kroon
• [gmx-users] Question about generating top file with different angle functions   Zhenhai Li
  • [gmx-users] Question about generating top file with different angle functions   Mark Abraham
• [gmx-users] Output frames within a defined distance range   Nash, Anthony
  • [gmx-users] Output frames within a defined distance range   Smith, Micholas D.
  • [gmx-users] Output frames within a defined distance range   Justin Lemkul
    • [gmx-users] Output frames within a defined distance range   Nash, Anthony
• [gmx-users] WG: 1, 3-dipalmitoyl-2-oleoyl parameterization based on Berger Lipid parameters   Möller, Anna Cäcilie
• [gmx-users] Question about generating top file with different angle functions (Mark Abraham)   Zhenhai Li
• [gmx-users] transition rate calculation   Lábas Anikó
  • [gmx-users] transition rate calculation   asaffarhi at post.tau.ac.il
• [gmx-users] no domain decomposition error while simulating membrane protein   shabana yasmeen
  • [gmx-users] no domain decomposition error while simulating membrane protein   Kutzner, Carsten
    • [gmx-users] no domain decomposition error while simulating membrane protein   shabana yasmeen
      • [gmx-users] no domain decomposition error while simulating membrane protein   Kutzner, Carsten
• [gmx-users] Precision of trr and checkpoint files   Kevin C Chan
• [gmx-users] mdp file for slab geometry   anu chandra
• [gmx-users] PMF using umbrella sampling and Gromacs 5.0   Eudes Fileti
  • [gmx-users] PMF using umbrella sampling and Gromacs 5.0   Christopher Neale
• [gmx-users] PMF using umbrella sampling and Gromacs 5.0   Jochen Hub
• [gmx-users] segfault with g_chi   Rafael I. Silverman y de la Vega
  • [gmx-users] segfault with g_chi   Rafael I. Silverman y de la Vega
• [gmx-users] Protein-Ligand Interactions   su
  • [gmx-users] Protein-Ligand Interactions   Smith, Micholas D.
    • [gmx-users] Protein-Ligand Interactions   su
• [gmx-users] Particle Insertion Method   robby manrique
• [gmx-users] Topology for DOPC lipid Charmm36 ff   Vy Phan
  • [gmx-users] Topology for DOPC lipid Charmm36 ff   Catarina A. Carvalheda dos Santos
    • [gmx-users] Topology for DOPC lipid Charmm36 ff   Vy Phan
• [gmx-users] g_sham   Naba
  • [gmx-users] g_sham   Smith, Micholas D.
    • [gmx-users] g_sham   Naba
      • [gmx-users] g_sham   Smith, Micholas D.
      • [gmx-users] g_sham   Naba
      • [gmx-users] g_sham   Naba
      • [gmx-users] g_sham   Smith, Micholas D.
      • [gmx-users] g_sham   Naba
      • [gmx-users] g_sham   Smith, Micholas D.
• [gmx-users] problem in umbrella sampling   Rajneet kaur Saini
  • [gmx-users] problem in umbrella sampling   Justin Lemkul
• [gmx-users] essential dynamics and flooding   Oskar Berntsson
• [gmx-users] structure factors   Raisa Kociurzynski
  • [gmx-users] structure factors   Tsjerk Wassenaar
• [gmx-users] distance restraint   xiao
  • [gmx-users] distance restraint   Justin Lemkul
• [gmx-users] Hole in the membrane during initial equilibration   anu chandra
• [gmx-users] Hole in the membrane during initial equilibration   anu chandra
• [gmx-users] Crashed restart hangs   Alex
• [gmx-users] How to perform MD in TFE+solvent solution in Gromacs   Bikash Ranjan Sahoo
  • [gmx-users] How to perform MD in TFE+solvent solution in Gromacs   Justin Lemkul
    • [gmx-users] How to perform MD in TFE+solvent solution in Gromacs   Bikash Ranjan Sahoo
• [gmx-users] No default Proper Dih. types   Dusan
• [gmx-users] Preparation of simulation system for GdmCl and protein simulation.   dipak sanap
  • [gmx-users] Preparation of simulation system for GdmCl and protein simulation.   Mark Abraham
    • [gmx-users] Preparation of simulation system for GdmCl and protein simulation.   dipak sanap
      • [gmx-users] Preparation of simulation system for GdmCl and protein simulation.   Mark Abraham
• [gmx-users] Blowing up   faride badalkhani
  • [gmx-users] Blowing up   Victor Rosas Garcia
    • [gmx-users] Blowing up   faride badalkhani
      • [gmx-users] Blowing up   Justin Lemkul
• [gmx-users] editconf -density   James Lord
  • [gmx-users] editconf -density   Dan Sponseller
    • [gmx-users] editconf -density   Mark Abraham
      • [gmx-users] editconf -density   James Lord
• [gmx-users] force field   mohammad r
  • [gmx-users] force field   Maryam Kowsar
    • [gmx-users] force field   Maryam Kowsar
      • [gmx-users] force field   mohammad r
      • [gmx-users] force field   Justin Lemkul
      • [gmx-users] force field   Maryam Kowsar
      • [gmx-users] force field   mohammad r
      • [gmx-users] force field   Justin Lemkul
      • [gmx-users] force field   mohammad r
• [gmx-users] None constraints and l-bfgs.   Dawid das
  • [gmx-users] None constraints and l-bfgs.   Justin Lemkul
    • [gmx-users] None constraints and l-bfgs.   Dawid das
      • [gmx-users] None constraints and l-bfgs.   Justin Lemkul
      • [gmx-users] None constraints and l-bfgs.   Dawid das
  • [gmx-users] None constraints and l-bfgs.   Mark Abraham
    • [gmx-users] None constraints and l-bfgs.   Dawid das
      • [gmx-users] None constraints and l-bfgs.   Mark Abraham
      • [gmx-users] None constraints and l-bfgs.   Dawid das
      • [gmx-users] None constraints and l-bfgs.   Mark Abraham
      • [gmx-users] None constraints and l-bfgs.   Dawid das
• [gmx-users] Can not run energy minimization for the protein-lipid system.   Vy Phan
  • [gmx-users] Can not run energy minimization for the protein-lipid system.   Justin Lemkul
• [gmx-users] Umbrella sampling sanity check   Nash, Anthony
  • [gmx-users] Umbrella sampling sanity check   Justin Lemkul
• [gmx-users] Position restraint some molecules of a moleculetype in a system   Khuong Truong Gia
  • [gmx-users] Position restraint some molecules of a moleculetype in a system   Mark Abraham
• [gmx-users] Warning with ewald-geometry = 3dc   anu chandra
• [gmx-users] Distribution of the TFE/Water molecules around a peptide   Adriana Garro
  • [gmx-users] Distribution of the TFE/Water molecules around a peptide   Smith, Micholas D.
• [gmx-users] problem in umbrella sampling   Justin Lemkul
• [gmx-users] Gromos 53a6, .mdp parameters for reaction field   Mohsen Ramezanpour
  • [gmx-users] Gromos 53a6, .mdp parameters for reaction field   James Lord
• [gmx-users] Surface roughness   gozde ergin
  • [gmx-users] Surface roughness   Erik Marklund
• [gmx-users] MD simulation using TFE   Bikash Ranjan Sahoo
  • [gmx-users] MD simulation using TFE   Mark Abraham
    • [gmx-users] MD simulation using TFE   Bikash Ranjan Sahoo
      • [gmx-users] MD simulation using TFE   Justin Lemkul
      • [gmx-users] MD simulation using TFE   Bikash Ranjan Sahoo
      • [gmx-users] Fwd: MD simulation using TFE   Bikash Ranjan Sahoo
      • [gmx-users] Fwd: MD simulation using TFE   Justin Lemkul
• [gmx-users] Unexpected free energy values.   sujithkakkat .
• [gmx-users] Proton transfer reaction in gromacs   Padmani Sandhu
• [gmx-users] 2. Proton transfer reaction in gromacs (Padmani Sandhu)   Groenhof, Gerrit
• [gmx-users] Distance restrain with dummy atom   anu chandra
  • [gmx-users] Distance restrain with dummy atom   Justin Lemkul
    • [gmx-users] Distance restrain with dummy atom   anu chandra
      • [gmx-users] Distance restrain with dummy atom   Justin Lemkul
      • [gmx-users] Distance restrain with dummy atom   anu chandra
      • [gmx-users] Distance restrain with dummy atom   Justin Lemkul
• [gmx-users] Pdb file   Sunil Ghimire
  • [gmx-users] Pdb file   Mark Abraham
    • [gmx-users] Pdb file   Sunil Ghimire
      • [gmx-users] Pdb file   Mark Abraham
      • [gmx-users] Pdb file   Vitaly V. Chaban
      • [gmx-users] Pdb file   Sunil Ghimire
      • [gmx-users] Pdb file   sujithkakkat .
      • [gmx-users] Pdb file   Mark Abraham
• [gmx-users] Charmm 36 parameter file for gromacs   Vy Phan
  • [gmx-users] Charmm 36 parameter file for gromacs   Justin Lemkul
    • [gmx-users] Charmm 36 parameter file for gromacs   Vy Phan
      • [gmx-users] Charmm 36 parameter file for gromacs   Justin Lemkul
• [gmx-users] Regarding positive potential energy   Sathish Kumar
• [gmx-users] Add new integrator   Eric Smoll
  • [gmx-users] Add new integrator   Michael Shirts
    • [gmx-users] Add new integrator   Eric Smoll
• [gmx-users] DPPC benchmark has different behavior on different machines   Vincent Ustach
• [gmx-users] charged group problem   Adriana Garro
• [gmx-users] Local pressure of water   折晓会
  • [gmx-users] Local pressure of water   gozde ergin
• [gmx-users] pdb file for united atom force fields   faride badalkhani
  • [gmx-users] pdb file for united atom force fields   Justin Lemkul
• [gmx-users] gmx cluster cut off   RJ
• [gmx-users] sample working DNA file?   toannt
  • [gmx-users] sample working DNA file?   Justin Lemkul
    • [gmx-users] sample working DNA file?   Naba
• [gmx-users] Charmm 36 parameter file for gromacs   Vy Phan
  • [gmx-users] Charmm 36 parameter file for gromacs   Justin Lemkul
    • [gmx-users] Charmm 36 parameter file for gromacs   Vy Phan
• [gmx-users] Charged group problem   Adriana Garro
  • [gmx-users] Charged group problem   Justin Lemkul
    • [gmx-users] Charged group problem   Adriana Garro
• [gmx-users] Force constant   Mehrnoosh Hazrati
  • [gmx-users] Force constant   André Farias de Moura
    • [gmx-users] Force constant   Mark Abraham
• [gmx-users] Change to umbrella sampling pull code   Nash, Anthony
  • [gmx-users] Change to umbrella sampling pull code   Mark Abraham
    • [gmx-users] Change to umbrella sampling pull code   Nash, Anthony
      • [gmx-users] Change to umbrella sampling pull code   Justin Lemkul
      • [gmx-users] Change to umbrella sampling pull code   Nash, Anthony
      • [gmx-users] Change to umbrella sampling pull code   Justin Lemkul
• [gmx-users] bonded parameter   حسن هاشم زاده
  • [gmx-users] bonded parameter   Maryam Kowsar
    • [gmx-users] bonded parameter   حسن هاشم زاده
      • [gmx-users] bonded parameter   Mark Abraham
      • [gmx-users] bonded parameter   حسن هاشم زاده
      • [gmx-users] bonded parameter   Mark Abraham
      • [gmx-users] bonded parameter   Mark Abraham
• [gmx-users] Question   Eric Smoll
  • [gmx-users] Question   Justin Lemkul
  • [gmx-users] Question   Mark Abraham
    • [gmx-users] Question   Eric Smoll
      • [gmx-users] Question   Justin Lemkul
• [gmx-users] charge in *.n2t file   حسن هاشم زاده
  • [gmx-users] charge in *.n2t file   Maryam Kowsar
    • [gmx-users] charge in *.n2t file   حسن هاشم زاده
• [gmx-users] TFE   Emran Heshmati
  • [gmx-users] TFE   Justin Lemkul
    • [gmx-users] TFE   Smith, Micholas D.
• [gmx-users] introduce Fluor as a accepotor in calculating hbonds   nazli kashani javid
  • [gmx-users] introduce Fluor as a accepotor in calculating hbonds   Justin Lemkul
• [gmx-users] Extending simulation with modifing .mdp file   Asmaa El khodary
  • [gmx-users] Extending simulation with modifing .mdp file   Justin Lemkul
• [gmx-users] Pressure from Ke and Virial from .edr   Hardy, Adam
  • [gmx-users] Pressure from Ke and Virial from .edr   Justin Lemkul
• [gmx-users] How error estimate is calculated by g_energy?   Dawid das
  • [gmx-users] How error estimate is calculated by g_energy?   Justin Lemkul
• [gmx-users] Free Energy Calculation   Rabindra Oliya
• [gmx-users] simulations of ice beginning to spin   Nathan K Houtz
  • [gmx-users] simulations of ice beginning to spin   Nathan K Houtz
    • [gmx-users] simulations of ice beginning to spin   Eric Smoll
      • [gmx-users] simulations of ice beginning to spin   Nathan K Houtz
      • [gmx-users] simulations of ice beginning to spin   Vitaly V. Chaban
      • [gmx-users] simulations of ice beginning to spin   Nathan K Houtz
      • [gmx-users] simulations of ice beginning to spin   Vitaly V. Chaban
      • [gmx-users] simulations of ice beginning to spin   Justin Lemkul
• [gmx-users] em_cnt_rna.jpg   soumadwip ghosh (via Google Drive)
• [gmx-users] CNT is apparently broken during energy minimization step   soumadwip ghosh
  • [gmx-users] CNT is apparently broken during energy minimization step   Victor Rosas Garcia
    • [gmx-users] CNT is apparently broken during energy minimization step   Justin Lemkul
• [gmx-users] GROMACS 5.1 official release   Mark Abraham
• [gmx-users] Probable bug in 5.0.4 gmx enemat   Tushar Ranjan Moharana
  • [gmx-users] Probable bug in 5.0.4 gmx enemat   Mark Abraham
• [gmx-users] Appending to files that were copied.   Dawid das
• [gmx-users] Gromacs 4.5 or 4.6???   elham tazikeh
  • [gmx-users] Gromacs 4.5 or 4.6???   Eric Smoll
• [gmx-users] Fwd: [g_mmpbsa] istallation Gromacs 4.6.7 Error   elham tazikeh
• [gmx-users] GROMOS atp file   faride badalkhani
  • [gmx-users] GROMOS atp file   Justin Lemkul
    • [gmx-users] GROMOS atp file   faride badalkhani
      • [gmx-users] GROMOS atp file   Justin Lemkul
      • [gmx-users] GROMOS atp file   faride badalkhani
• [gmx-users] reproducibility of trajectory   Qing Lv
• [gmx-users] simulation acceleration of SWM4-NDP water and ions   折晓会
  • [gmx-users] simulation acceleration of SWM4-NDP water and ions   Justin Lemkul
    • [gmx-users] simulation acceleration of SWM4-NDP water and ions   折晓会
• [gmx-users] log file not writing simulation time in continuous manner   anu chandra
  • [gmx-users] log file not writing simulation time in continuous manner   Justin Lemkul
    • [gmx-users] log file not writing simulation time in continuous manner   anu chandra
• [gmx-users] Difference in molecule wrapping in gro file   anu chandra
• [gmx-users] infinite force at the membrane lipid   Vy Phan
  • [gmx-users] infinite force at the membrane lipid   Justin Lemkul
    • [gmx-users] infinite force at the membrane lipid   Vy Phan
• [gmx-users] Termini database-more details , meaning of each lines and how to add or delete atoms-reg   Nikhil Maroli
  • [gmx-users] Termini database-more details , meaning of each lines and how to add or delete atoms-reg   Justin Lemkul
• [gmx-users] infinite force at the membrane lipid   ABEL Stephane 175950
  • [gmx-users] infinite force at the membrane lipid   Vy Phan
• [gmx-users] g_mmpbsa   elham tazikeh
  • [gmx-users] g_mmpbsa   Justin Lemkul
• [gmx-users] binding free energy   elham tazikeh
  • [gmx-users] binding free energy   Vitaly V. Chaban
• [gmx-users] Problem compiling Gromacs 5.1 with XL Compiler   Jernej Zidar
  • [gmx-users] Problem compiling Gromacs 5.1 with XL Compiler   Mark Abraham
• [gmx-users] itp file - number of function   Mehrnoosh Hazrati
  • [gmx-users] itp file - number of function   Victor Rosas Garcia
  • [gmx-users] itp file - number of function   Justin Lemkul
• [gmx-users] [~SOLVED] Problem compiling Gromacs 5.1 with XL   Jernej Zidar
  • [gmx-users] [~SOLVED] Problem compiling Gromacs 5.1 with XL   Mark Abraham
• [gmx-users] Respect waters in crystallographic pdb file?   Jorge Fernandez de Cossio Diaz
  • [gmx-users] Respect waters in crystallographic pdb file?   Johnny Lu
  • [gmx-users] Respect waters in crystallographic pdb file?   Justin Lemkul
• [gmx-users] box size and neighbor list cut-off   Johnny Lu
  • [gmx-users] box size and neighbor list cut-off   Justin Lemkul
    • [gmx-users] box size and neighbor list cut-off   Johnny Lu
      • [gmx-users] box size and neighbor list cut-off   Johnny Lu
      • [gmx-users] box size and neighbor list cut-off   Mark Abraham
• [gmx-users] gromacs 4.6.1 installation problem   Roshan Shrestha
  • [gmx-users] gromacs 4.6.1 installation problem   Jordan Wolfson
  • [gmx-users] gromacs 4.6.1 installation problem   Justin Lemkul
• [gmx-users] Few queries about microsecond long simulations   anu chandra
  • [gmx-users] Few queries about microsecond long simulations   Felipe Merino
    • [gmx-users] Few queries about microsecond long simulations   Ganesh Shahane
      • [gmx-users] Few queries about microsecond long simulations   anu chandra
      • [gmx-users] Few queries about microsecond long simulations   anu chandra
      • [gmx-users] Few queries about microsecond long simulations   Ganesh Shahane
      • [gmx-users] Few queries about microsecond long simulations   Felipe Merino
• [gmx-users] Error: 'mdrun_mpi' is not a GROMACS command.   anu chandra
  • [gmx-users] Error: 'mdrun_mpi' is not a GROMACS command.   Justin Lemkul
    • [gmx-users] Error: 'mdrun_mpi' is not a GROMACS command.   anu chandra
  • [gmx-users] Error: 'mdrun_mpi' is not a GROMACS command.   Asmaa El khodary
• [gmx-users] Umbrella sampling and transmission coefficient   gozde ergin
• [gmx-users] Problems plotting gyrate.xvg   Daniela Rivas
  • [gmx-users] Problems plotting gyrate.xvg   Smith, Micholas D.
    • [gmx-users] Problems plotting gyrate.xvg   Daniela Rivas
      • [gmx-users] Problems plotting gyrate.xvg   Smith, Micholas D.
      • [gmx-users] Problems plotting gyrate.xvg   Justin Lemkul
      • [gmx-users] Problems plotting gyrate.xvg   Daniela Rivas
      • [gmx-users] Problems plotting gyrate.xvg   Justin Lemkul
      • [gmx-users] Problems plotting gyrate.xvg   Felipe Merino
      • [gmx-users] Problems plotting gyrate.xvg   Smith, Micholas D.
      • [gmx-users] Problems plotting gyrate.xvg   Daniela Rivas
      • [gmx-users] Problems plotting gyrate.xvg   Mark Abraham
• [gmx-users] acpype problem   mohammad r
• [gmx-users] Thread, Multiple gpu, and sharing node   Johnny Lu
  • [gmx-users] Thread, Multiple gpu, and sharing node   Mark Abraham
• [gmx-users] add NaCl   mohammad r
• [gmx-users] Tesla K40 and K80 performance for Gromacs   Zheng Ruan
  • [gmx-users] Tesla K40 and K80 performance for Gromacs   Szilárd Páll
• [gmx-users] Cl topology in gromacs   Albert
  • [gmx-users] Cl topology in gromacs   Mark Abraham
• [gmx-users] reproducibility of trajectory   Qing Lv
  • [gmx-users] reproducibility of trajectory   Mark Abraham
    • [gmx-users] reproducibility of trajectory   Qing Lv
• [gmx-users] energy minimization   mohammad r
• [gmx-users] energy minimization   mohammad r
• [gmx-users] mdrun writes gro file in two different formats and failed visualization of trajectories   anu chandra
  • [gmx-users] mdrun writes gro file in two different formats and failed visualization of trajectories   Justin Lemkul
    • [gmx-users] mdrun writes gro file in two different formats and failed visualization of trajectories   anu chandra
      • [gmx-users] mdrun writes gro file in two different formats and failed visualization of trajectories   Justin Lemkul
      • [gmx-users] mdrun writes gro file in two different formats and failed visualization of trajectories   Mark Abraham
• [gmx-users] Error while configuring gmx-3.3.1   Padmani Sandhu
  • [gmx-users] Error while configuring gmx-3.3.1   Mark Abraham
  • [gmx-users] Error while configuring gmx-3.3.1   Justin Lemkul
    • [gmx-users] Error while configuring gmx-3.3.1   Padmani Sandhu
      • [gmx-users] Error while configuring gmx-3.3.1   Padmani Sandhu
      • [gmx-users] Error while configuring gmx-3.3.1   Mark Abraham
      • [gmx-users] Error while configuring gmx-3.3.1   Padmani Sandhu
• [gmx-users] energy minimization   mohammad r
• [gmx-users] energy minimization   mohammad r
• [gmx-users] conformational entropy with/without jumps   Ahmet Yıldırım
  • [gmx-users] conformational entropy with/without jumps   Tsjerk Wassenaar
• [gmx-users] Problem compiling Gromacs 5.1   岡部篤俊
  • [gmx-users] Problem compiling Gromacs 5.1   Mark Abraham
    • [gmx-users] Problem compiling Gromacs 5.1   atsutoshi0708 at gmail.com
      • [gmx-users] Problem compiling Gromacs 5.1   Kroon, P.C.
      • [gmx-users] Problem compiling Gromacs 5.1   岡部篤俊
      • [gmx-users] Problem compiling Gromacs 5.1   Justin Lemkul
      • [gmx-users] Problem compiling Gromacs 5.1   Mark Abraham
      • [gmx-users] Problem compiling Gromacs 5.1   Atsutoshi Okabe
      • [gmx-users] Problem compiling Gromacs 5.1   Justin Lemkul
  • [gmx-users] Problem compiling Gromacs 5.1   Felipe Merino
    • [gmx-users] Problem compiling Gromacs 5.1   Mark Abraham
      • [gmx-users] Problem compiling Gromacs 5.1   Felipe Merino
• [gmx-users] distance issues with umbrella sampling   Nash, Anthony
  • [gmx-users] distance issues with umbrella sampling   Nima Soltani
• [gmx-users] energy minimization   mohammad r
• [gmx-users] trjconv -dt issue   Matthias Ernst
  • [gmx-users] trjconv -dt issue   Mark Abraham
    • [gmx-users] trjconv -dt issue   Matthias Ernst
      • [gmx-users] trjconv -dt issue   Mark Abraham
      • [gmx-users] another trjconv issue   Matthias Ernst
      • [gmx-users] another trjconv issue   Mark Abraham
• [gmx-users] AIX XLC Gromacs-5.1-rc1. Undefined reference. Underscore issue.   Carlos Aguni
  • [gmx-users] AIX XLC Gromacs-5.1-rc1. Undefined reference. Underscore issue.   Mark Abraham
    • [gmx-users] AIX XLC Gromacs-5.1-rc1. Undefined reference. Underscore issue.   Carlos Aguni
      • [gmx-users] AIX XLC Gromacs-5.1-rc1. Undefined reference. Underscore issue.   Mark Abraham
• [gmx-users] High load imbalance: 31.8%   Nash, Anthony
  • [gmx-users] High load imbalance: 31.8%   Mark Abraham
    • [gmx-users] High load imbalance: 31.8%   Nash, Anthony
      • [gmx-users] High load imbalance: 31.8%   Szilárd Páll
      • [gmx-users] High load imbalance: 31.8%   Szilárd Páll
      • [gmx-users] High load imbalance: 31.8%   Nash, Anthony
      • [gmx-users] High load imbalance: 31.8%   Szilárd Páll
• [gmx-users] Adding HSD residue to AMBER ff99SB-ILDN   Simone Bolognini
  • [gmx-users] Adding HSD residue to AMBER ff99SB-ILDN   Justin Lemkul
    • [gmx-users] Adding HSD residue to AMBER ff99SB-ILDN   Simone Bolognini
      • [gmx-users] Adding HSD residue to AMBER ff99SB-ILDN   Justin Lemkul
      • [gmx-users] Adding HSD residue to AMBER ff99SB-ILDN   Simone Bolognini
• [gmx-users] atom types IP and IM   mohammad r
• [gmx-users] A query about nsteps   anu chandra
  • [gmx-users] A query about nsteps   Justin Lemkul
• [gmx-users] CHARMM forcefield parameters for carbon naotubes   Sanchaita Rajkhowa
  • [gmx-users] CHARMM forcefield parameters for carbon naotubes   Justin Lemkul
• [gmx-users] Respect waters in crystallographic pdb file?   Jorge Fernandez de Cossio Diaz
  • [gmx-users] Respect waters in crystallographic pdb file?   Justin Lemkul
• [gmx-users] inversion potential   Nima Sa
• [gmx-users] Fatal error: Index contains atom numbers larger than the topology   Marcelo Depólo
  • [gmx-users] Fatal error: Index contains atom numbers larger than the topology   Justin Lemkul
• [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   折晓会
  • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   Justin Lemkul
    • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   折晓会
      • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   Justin Lemkul
      • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   折晓会
      • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   Justin Lemkul
      • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   折晓会
      • [gmx-users] Incorrect number of parameters - found 3, expected 1 or 1 for Polarization.   Justin Lemkul
• [gmx-users] Broken protein chain: "WARNING: Listed nonbonded interaction between particles ..."   Jorge Fernandez de Cossio Diaz
  • [gmx-users] Broken protein chain: "WARNING: Listed nonbonded interaction between particles ..."   Mark Abraham
• [gmx-users] What's the point of adding ions to neutralize the system?   Jorge Fernandez de Cossio Diaz
  • [gmx-users] What's the point of adding ions to neutralize the system?   Victor Rosas Garcia
    • [gmx-users] What's the point of adding ions to neutralize the system?   Justin Lemkul
      • [gmx-users] What's the point of adding ions to neutralize the system?   Smith, Micholas D.
• [gmx-users] Essential Dynamics and Umbrella Sampling   ANDRES ADOLFO ORTEGA GUERRERO
• [gmx-users] Broken protein chain: "WARNING: Listed nonbonded interaction between particles ..."   Jorge Fernandez de Cossio Diaz
  • [gmx-users] Broken protein chain: "WARNING: Listed nonbonded interaction between particles ..."   Justin Lemkul
• [gmx-users] Broken protein chain: "WARNING: Listed nonbonded   Jorge Fernandez de Cossio Diaz
  • [gmx-users] Broken protein chain: "WARNING: Listed nonbonded   Justin Lemkul
• [gmx-users] Non Periodic Coordinate File   ANAND AMITKUMAR Dharia
  • [gmx-users] Non Periodic Coordinate File   Justin Lemkul
    • [gmx-users] Non Periodic Coordinate File   ANAND AMITKUMAR Dharia
• [gmx-users] No Checkpoint File generated   Chunlei ZHANG
  • [gmx-users] No Checkpoint File generated   Mark Abraham
• [gmx-users] make check problem   Zhenyu Meng
  • [gmx-users] make check problem   Mark Abraham
    • [gmx-users] make check problem   Zhenyu Meng
      • [gmx-users] make check problem   Mark Abraham
      • [gmx-users] make check problem   Zhenyu Meng
• [gmx-users] Membrane protein insertion/orientation methods   Yasser Almeida Hernández
  • [gmx-users] Membrane protein insertion/orientation methods   Tsjerk Wassenaar
    • [gmx-users] Membrane protein insertion/orientation methods   Catarina A. Carvalheda dos Santos
• [gmx-users] Membrane protein insertion/orientation methods   Yasser Almeida Hernández
• [gmx-users] pairwise h-bonds   bernhard
  • [gmx-users] pairwise h-bonds   Erik Marklund
• [gmx-users] RE : Membrane protein insertion/orientation methods   safasouilem1
• [gmx-users] Probable bug in 5.0.4 gmx enemat   Tushar Ranjan Moharana
  • [gmx-users] Probable bug in 5.0.4 gmx enemat   Mark Abraham
• [gmx-users] Modified Dihedral Potential   atanu das
  • [gmx-users] Modified Dihedral Potential   Justin Lemkul
    • [gmx-users] Modified Dihedral Potential   atanu das
• [gmx-users] OPLS and GROMOS forcefields   Stella Nickerson
  • [gmx-users] OPLS and GROMOS forcefields   Justin Lemkul
  • [gmx-users] OPLS and GROMOS forcefields   Vitaly V. Chaban
• [gmx-users] Force field parameterisation   Nash, Anthony
  • [gmx-users] Force field parameterisation   Vitaly V. Chaban
• [gmx-users] problem with append option while extending simulation   Asmaa El khodary
• [gmx-users] Script to submit the md simulations on cluster.   Seera Suryanarayana
  • [gmx-users] Script to submit the md simulations on cluster.   Mark Abraham
• [gmx-users] Heat autocorrelation function   Sunil Ghimire
  • [gmx-users] Heat autocorrelation function   David van der Spoel
    • [gmx-users] Heat autocorrelation function   Sunil Ghimire
      • [gmx-users] Heat autocorrelation function   David van der Spoel
      • [gmx-users] Heat autocorrelation function   Sunil Ghimire
• [gmx-users] Membrane protein insertion   Yasser Almeida Hernández
  • [gmx-users] Membrane protein insertion   Mark Abraham
    • [gmx-users] Membrane protein insertion   Nash, Anthony
• [gmx-users] Is "dVremain/dl" related to "fep-lambdas"?   Igor Leontyev
  • [gmx-users] Is "dVremain/dl" related to "fep-lambdas"?   Michael Shirts
• [gmx-users] Lambada + InflateGRO2 and membrane protein simulation   Brett
• [gmx-users] pairwise h-bonds   bernhard
  • [gmx-users] pairwise h-bonds   Erik Marklund
• [gmx-users] Coulomb barriers and Coulomb Softcore Potential   Andreas Mecklenfeld
  • [gmx-users] Coulomb barriers and Coulomb Softcore Potential   Michael Shirts
• [gmx-users] calculate avarage and maximum non-bonded energy between energy groups   Tushar Ranjan Moharana
  • [gmx-users] calculate avarage and maximum non-bonded energy between energy groups   Vitaly V. Chaban
• [gmx-users] Randomly alter pdb start coordinates   PER HENRY ANDREAS WITTLER
  • [gmx-users] Randomly alter pdb start coordinates   Mark Abraham
• [gmx-users] Single point energy calculations   soumadwip ghosh
  • [gmx-users] Single point energy calculations   Mark Abraham
• [gmx-users] No ./configure file   Raag Saluja
  • [gmx-users] No ./configure file   Mark Abraham
• [gmx-users] em.gro file doesnt show a reasonable structure in VMD   faride badalkhani
  • [gmx-users] em.gro file doesnt show a reasonable structure in VMD   Mark Abraham
    • [gmx-users] em.gro file doesnt show a reasonable structure in VMD   faride badalkhani
      • [gmx-users] em.gro file doesnt show a reasonable structure in VMD   Justin Lemkul
• [gmx-users] Single point energy calculations   soumadwip ghosh
• [gmx-users] How do I calculate the difference between two energy values?   minky son
  • [gmx-users] How do I calculate the difference between two energy values?   Peter Stern
    • [gmx-users] How do I calculate the difference between two energy values?   Johnny Lu
      • [gmx-users] How do I calculate the difference between two energy values?   Peter Stern
• [gmx-users] Membrane protein insertion   Yasser Almeida Hernández
• [gmx-users] gmx dos - Possible bug on 5.0.6   Marcelo Depólo
  • [gmx-users] gmx dos - Possible bug on 5.0.6   David van der Spoel
    • [gmx-users] gmx dos - Possible bug on 5.0.6   Marcelo Depólo
      • [gmx-users] gmx dos - Possible bug on 5.0.6   Justin Lemkul
• [gmx-users] chemical potential differences between two component liquids and crystal structures in gromacs   Nathan K Houtz
  • [gmx-users] chemical potential differences between two component liquids and crystal structures in gromacs   Michael Shirts
• [gmx-users] Calculating RDF Using Closet Atom   Boning Wu
• [gmx-users] Comparing various MD packages   Sabyasachi Sahoo
  • [gmx-users] Comparing various MD packages   Mark Abraham
• [gmx-users] Input files for performance analysis   Sabyasachi Sahoo
  • [gmx-users] Input files for performance analysis   Kutzner, Carsten
• [gmx-users] Bond rotation freedom or mobility   Eric Smoll
  • [gmx-users] Bond rotation freedom or mobility   Justin Lemkul
• [gmx-users] Dihedral Angle Cross-correlation Function   atanu das
• [gmx-users] Gromacs-5.1 XLC Seg. Fault.   Carlos Aguni
• [gmx-users] Testing gromacs on IBM POWER8   Fabricio Cannini
  • [gmx-users] Testing gromacs on IBM POWER8   Mark Abraham
    • [gmx-users] Testing gromacs on IBM POWER8   Szilárd Páll
• [gmx-users] Helicity over simulation time?   Rajiv
  • [gmx-users] Helicity over simulation time?   Justin Lemkul
• [gmx-users] probability distributions in gmx   RJ
  • [gmx-users] probability distributions in gmx   Justin Lemkul
• [gmx-users] implicit solvation on gpu   Sana Saeed
• [gmx-users] calculate average and maximum non-bonded energy between energy groups   Tushar Ranjan Moharana
  • [gmx-users] calculate average and maximum non-bonded energy between energy groups   Justin Lemkul
• [gmx-users] Pull parameters to Restrain motion along the Z Axis   Live King
  • [gmx-users] Pull parameters to Restrain motion along the Z Axis   Barnett, James W
    • [gmx-users] Pull parameters to Restrain motion along the Z Axis   Live King
      • [gmx-users] Pull parameters to Restrain motion along the Z Axis   Barnett, James W.
• [gmx-users] force-force correlation function   gozde ergin
• [gmx-users] Coulomb barriers and Coulomb Softcore Potential   Andreas Mecklenfeld
• [gmx-users] Position restrain Bilayer   khada at web.de
  • [gmx-users] Position restrain Bilayer   Justin Lemkul
• [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Victor Ma
  • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Barnett, James W
    • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Justin Lemkul
      • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Victor Ma
      • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Justin Lemkul
      • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Victor Ma
      • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Victor Ma
      • [gmx-users] what's the easiest way to generate a md trajectory for ligand flying into/being pulled out of the pocket?   Justin Lemkul
• [gmx-users] Restart -append   Johnny Lu
  • [gmx-users] Restart -append   Justin Lemkul
• [gmx-users] calculate average and maximum non-bonded energy between energy groups   Tushar Ranjan Moharana
  • [gmx-users] calculate average and maximum non-bonded energy between energy groups   Justin Lemkul
• [gmx-users] sanjay (membrane dynamics)   sanjay choubey
  • [gmx-users] sanjay (membrane dynamics)   Justin Lemkul
• [gmx-users] autocorrelation function   Sunil Ghimire
  • [gmx-users] autocorrelation function   Mark Abraham
    • [gmx-users] autocorrelation function   Sunil Ghimire
      • [gmx-users] autocorrelation function   Mark Abraham
    • [gmx-users] autocorrelation function   gozde ergin
      • [gmx-users] autocorrelation function   Sunil Ghimire
      • [gmx-users] autocorrelation function   Mark Abraham
      • [gmx-users] autocorrelation function   Sunil Ghimire
      • [gmx-users] autocorrelation function   Mark Abraham
• [gmx-users] how to fix a molecule's initial configuration   li he
  • [gmx-users] how to fix a molecule's initial configuration   li he
    • [gmx-users] how to fix a molecule's initial configuration   Mark Abraham
• [gmx-users] adding hydrogens to pdb file   elham tazikeh
  • [gmx-users] adding hydrogens to pdb file   Johnny Lu
    • [gmx-users] adding hydrogens to pdb file   Johnny Lu
      • [gmx-users] adding hydrogens to pdb file   Justin Lemkul
• [gmx-users] Fatal error: Residue 'GTP' not found in residue topology database"   Raag Saluja
  • [gmx-users] Fatal error: Residue 'GTP' not found in residue topology database"   Mark Abraham
• [gmx-users] Probable bug in 5.0.4 gmx enemat   Tushar Ranjan Moharana
• [gmx-users] Free energy calculation - parallelization   Andreas Schöppach
• [gmx-users] Umbrella Sampling - Experiment Question   Douglas Grahame
• [gmx-users] g_chi Segmentation fault for -maxchi greater than 3   Dina Mirijanian
  • [gmx-users] g_chi Segmentation fault for -maxchi greater than 3   Justin Lemkul
    • [gmx-users] g_chi Segmentation fault for -maxchi greater than 3   Dina Mirijanian
      • [gmx-users] g_chi Segmentation fault for -maxchi greater than 3   Dina Mirijanian
      • [gmx-users] g_chi Segmentation fault for -maxchi greater than 3   Justin Lemkul
      • [gmx-users] g_chi Segmentation fault for -maxchi greater than 3   Dina Mirijanian
• [gmx-users] HREX simulation   Shyno Mathew
  • [gmx-users] HREX simulation   Michael Shirts
    • [gmx-users] HREX simulation   Mark Abraham
      • [gmx-users] HREX simulation   Michael Shirts
  • [gmx-users] HREX simulation   Shyno Mathew
• [gmx-users] OPLS forcefield amide charge   Stella Nickerson
  • [gmx-users] OPLS forcefield amide charge   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 136, Issue 133   Raag Saluja
  • [gmx-users] Fatal error: Residue 'GTP' not found in residue topology, database"   Justin Lemkul
• [gmx-users] OPLS forcefield amide charge   Pallavi Banerjee
• [gmx-users] Configuration bug preventing GROMACS 5.0 build with Intel compiler?   Åke Sandgren
• [gmx-users] trjcat problem   pratibha kapoor
  • [gmx-users] trjcat problem   Mark Abraham
• [gmx-users] REMD temperature trajectory   Nawel Mele
• [gmx-users] OPLS forcefield amide charge   Pallavi Banerjee
  • [gmx-users] OPLS forcefield amide charge   Stella Nickerson
• [gmx-users] DPPC/DPPE minim.mdp   Poncho Arvayo Zatarain
  • [gmx-users] DPPC/DPPE minim.mdp   Justin Lemkul
• [gmx-users] Membrane simulation fatal error   muhammad tahir ayub
  • [gmx-users] Membrane simulation fatal error   Justin Lemkul
• [gmx-users] No such moleculetype   elham tazikeh
  • [gmx-users] No such moleculetype   Mark Abraham
  • [gmx-users] No such moleculetype   Jordan Wolfson
• [gmx-users] Green Kubo viscocity calculation   Aishwary Shivgan
  • [gmx-users] Green Kubo viscocity calculation   David van der Spoel
    • [gmx-users] Green Kubo viscocity calculation   Aishwary Shivgan
      • [gmx-users] Green Kubo viscocity calculation   David van der Spoel
      • [gmx-users] Green Kubo viscocity calculation   Vitaly V. Chaban
• [gmx-users] box volume   soumadwip ghosh
  • [gmx-users] box volume   Vitaly V. Chaban
• [gmx-users] regarding box volume   soumadwip ghosh
  • [gmx-users] regarding box volume   Johnny Lu
    • [gmx-users] regarding box volume   Justin Lemkul
• [gmx-users] Split Trajectory file into parts   Johnny Lu
  • [gmx-users] Split Trajectory file into parts   Justin Lemkul
    • [gmx-users] Split Trajectory file into parts   Peter Kroon
• [gmx-users] create custom position restraints for martini ff   khada at web.de
  • [gmx-users] create custom position restraints for martini ff   Justin Lemkul
• [gmx-users] create custom position restraints for martini ff   khada at web.de
  • [gmx-users] create custom position restraints for martini ff   Justin Lemkul
• [gmx-users] Protein-Ligand Covalent Bonds   Jordan Wolfson
  • [gmx-users] Protein-Ligand Covalent Bonds   Justin Lemkul
    • [gmx-users] Protein-Ligand Covalent Bonds   Jordan Wolfson
• [gmx-users] g_select gromacs version 4.6.3   Stephanie Teich-McGoldrick
  • [gmx-users] g_select gromacs version 4.6.3   Justin Lemkul
• [gmx-users] Calculation of Cv   Sunil Ghimire
  • [gmx-users] Calculation of Cv   Justin Lemkul
    • [gmx-users] Calculation of Cv   Sunil Ghimire
      • [gmx-users] Calculation of Cv   David van der Spoel
      • [gmx-users] Calculation of Cv   Sunil Ghimire
      • [gmx-users] Calculation of Cv   Marcelo Depólo
• [gmx-users] mdrun error   tasneem kausar
  • [gmx-users] mdrun error   Justin Lemkul
• [gmx-users] Fatal error: Residue 'GTP' not found in residue topology database   Raag Saluja
  • [gmx-users] Fatal error: Residue 'GTP' not found in residue topology database   Justin Lemkul
• [gmx-users] g_hydorder.   dipak sanap
• [gmx-users] Fwd: NO BONDS IN TOPOLOGY FILES   Alex Cullen
  • [gmx-users] Fwd: NO BONDS IN TOPOLOGY FILES   Justin Lemkul
• [gmx-users] Fatal error: No molecule were defined in the system   Mehrnoosh Hazrati
  • [gmx-users] Fatal error: No molecule were defined in the system   Repic Matej
• [gmx-users] vaccume simulation   tasneem kausar
  • [gmx-users] vaccume simulation   Justin Lemkul
• [gmx-users] Impact of ignoring hydrogens   su
  • [gmx-users] Impact of ignoring hydrogens   Repic Matej
    • [gmx-users] Impact of ignoring hydrogens   Peter Stern
      • [gmx-users] Impact of ignoring hydrogens   su
• [gmx-users] question about g_sas: dgSolv   ANTHONY C MANSON
• [gmx-users] computation of energy for energygrps + problem using g_enemat   ANTHONY C MANSON
• [gmx-users] Free energy calculation using inter-molecular bonded interaction   Atsutoshi Okabe
• [gmx-users] extend a simulation just with xtc file   Adriana Garro
• [gmx-users] No such moleculetype DPPE   Poncho Arvayo Zatarain

Last message date: Mon Aug 31 19:01:03 CEST 2015
Archived on: Mon Aug 31 19:01:04 CEST 2015

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