March 2012 Archives by thread

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Starting: Thu Mar 1 00:11:48 CET 2012
Ending: Sat Mar 31 21:16:29 CEST 2012
Messages: 1028

• [gmx-users] how to use charmm ff in gmx and carbohydrate forcefield   Tom
  • [gmx-users] how to use charmm ff in gmx and carbohydrate forcefield   Peter C. Lai
• [gmx-users] on the dissociation of protein complex during MD   Dialing Pretty
  • [gmx-users] on the dissociation of protein complex during MD   Mark Abraham
  • [gmx-users] a question related to MD by gromacs   Dialing Pretty
    • [gmx-users] a question related to MD by gromacs   Justin A. Lemkul
• [gmx-users] dihedral distributions   Juliette N.
  • [gmx-users] dihedral distributions   Mark Abraham
    • [gmx-users] dihedral distributions   Juliette N.
      • [gmx-users] dihedral distributions   Dallas Warren
• [gmx-users] crashed run...   rama david
  • [gmx-users] crashed run...   Mark Abraham
• [gmx-users] using g_angle   francesca vitalini
• [gmx-users] PBC - Protein and Ligands   Steven Neumann
• [gmx-users] new OPLS-AA dihedral parameters for hydrocarbons ?   Ester Chiessi
• [gmx-users] reverse transformation with dihedral restraints   francesca vitalini
• [gmx-users] Re: Umbrella Sampling - ligand   Justin A. Lemkul
• [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
  • [gmx-users] Segmentation fault - Implicit solvent   Justin A. Lemkul
    • [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
      • [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
      • [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
      • [gmx-users] Segmentation fault - Implicit solvent   Justin A. Lemkul
      • [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
      • [gmx-users] Segmentation fault - Implicit solvent   Justin A. Lemkul
      • [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
      • [gmx-users] Segmentation fault - Implicit solvent   Mark Abraham
      • [gmx-users] Segmentation fault - Implicit solvent   Steven Neumann
• [gmx-users] Random option - genion   Maurício Menegatti Rigo
  • [gmx-users] Random option - genion   Justin A. Lemkul
    • [gmx-users] Random option - genion   Maurício Menegatti Rigo
    • [gmx-users] Random option - genion   Mark Abraham
• [gmx-users] genconf -renumber merges atom number and ID columns   Ricardo O. S. Soares
  • [gmx-users] genconf -renumber merges atom number and ID columns   Justin A. Lemkul
    • [gmx-users] genconf -renumber merges atom number and ID columns   Ricardo O. S. Soares
• [gmx-users] Test particle insertion extra coordinate   MPID
  • [gmx-users] Re: Test particle insertion extra coordinate   MPID
    • [gmx-users] Re: Test particle insertion extra coordinate   João M. Damas
      • [gmx-users] Re: Test particle insertion extra coordinate   MPID
      • [gmx-users] Re: Test particle insertion extra coordinate   João M. Damas
      • [gmx-users] Re: Test particle insertion extra coordinate   MPID
• [gmx-users] mdrun -multi flag   bo.shuang
  • [gmx-users] mdrun -multi flag   Mark Abraham
• [gmx-users] MDrun append...   rama david
  • [gmx-users] MDrun append...   Mark Abraham
    • [gmx-users] MDrun append...   lloyd riggs
• [gmx-users] dssp and gromacs version   lina
  • [gmx-users] dssp and gromacs version   Mark Abraham
    • [gmx-users] dssp and gromacs version   lina
      • [gmx-users] dssp and gromacs version   João Henriques
• [gmx-users] Gromacs-GPU benchmark test killed after exhausting the memory   Szilárd Páll
• [gmx-users] impropers and residue number   Lara Bunte
  • [gmx-users] impropers and residue number   Justin A. Lemkul
• [gmx-users] Lennard-Jones Interactions in Gromacs   Lara Bunte
  • [gmx-users] Re: Lennard-Jones Interactions in Gromacs   Lara Bunte
    • [gmx-users] Re: Lennard-Jones Interactions in Gromacs   Justin A. Lemkul
• [gmx-users] Re: Re: mdrun -multi flag (Mark Abraham)   bo.shuang
  • [gmx-users] Re: Re: mdrun -multi flag (Mark Abraham)   Justin A. Lemkul
• [gmx-users] Extending simulation with -pd   Steven Neumann
  • [gmx-users] Extending simulation with -pd   Peter C. Lai
• [gmx-users] [ bondedtypes ]   Lara Bunte
  • [gmx-users] [ bondedtypes ]   Justin A. Lemkul
  • [gmx-users] [ bondedtypes ]   Mark Abraham
• [gmx-users] Re: Re: Re: Re: mdrun -multi flag (Mark Abraham) (Justin A. Lemkul)   bo.shuang
  • [gmx-users] Re: Re: Re: Re: mdrun -multi flag (Mark Abraham) (Justin A. Lemkul)   Justin A. Lemkul
  • [gmx-users] Re: Re: Re: Re: mdrun -multi flag (Mark Abraham) (Justin A. Lemkul)   Mark Abraham
• [gmx-users] Anomalous temperature   zhongjin
  • [gmx-users] Anomalous temperature   Mark Abraham
• [gmx-users] do_dssp segmentation fault   arun kumar
  • [gmx-users] do_dssp segmentation fault   Mark Abraham
• [gmx-users] do_dssp segmentation fault   arun kumar
  • [gmx-users] do_dssp segmentation fault   Mark Abraham
• [gmx-users] Help us steer future GROMACS development, with a chance to win a $2000+ Tesla C2075 GPU   Erik Lindahl
  • [gmx-users] IMPORTANT REMINDER: Gromacs survey (with a chance to win a $2000 GPU)   Erik Lindahl
• [gmx-users] problem in using OPLS forcefield parameter in lipid simulation   Anushree Tripathi
  • [gmx-users] problem in using OPLS forcefield parameter in lipid simulation   Mark Abraham
• [gmx-users] Re: Gromacs-GPU benchmark test killed after exhausting the memory   Efrat Exlrod
  • [gmx-users] Re: Gromacs-GPU benchmark test killed after exhausting the memory   Szilárd Páll
• [gmx-users] Amber99bsc0   Amir Abbasi
  • [gmx-users] Amber99bsc0   Matthias Ernst
• [gmx-users] Advice on High Precision Structure File Formats   Andrew DeYoung
  • [gmx-users] Advice on High Precision Structure File Formats   David van der Spoel
• [gmx-users] how modify the forcefield amino acid definitions for non-naturally occuring amino acids?   Kirill Bessonov
  • [gmx-users] how modify the forcefield amino acid definitions for non-naturally occuring amino acids?   Justin A. Lemkul
  • [gmx-users] Re: how modify the forcefield amino acid definitions for non-naturally occuring amino acids?   Kirill Bessonov
    • [gmx-users] Re: how modify the forcefield amino acid definitions for non-naturally occuring amino acids?   Justin A. Lemkul
• [gmx-users] Is TRO defined correctly in the ffG43a1p forcefield file?   Kirill Bessonov
  • [gmx-users] Is TRO defined correctly in the ffG43a1p forcefield file?   Justin A. Lemkul
• [gmx-users] Umbrella Sampling - NPT   Steven Neumann
  • [gmx-users] Umbrella Sampling - NPT   Justin A. Lemkul
• [gmx-users] cannot determine precision of trn file   Nidhi Katyal
  • [gmx-users] cannot determine precision of trn file   Mark Abraham
    • [gmx-users] cannot determine precision of trn file   Nidhi Katyal
      • [gmx-users] cannot determine precision of trn file   Mark Abraham
• [gmx-users] Distance between selected atoms during simulation   James Starlight
  • [gmx-users] Distance between selected atoms during simulation   Mark Abraham
• [gmx-users] Simple LJ system   Jeff Armstrong
  • [gmx-users] Simple LJ system   Justin A. Lemkul
• [gmx-users] [ bondedtypes ]   Lara Bunte
• [gmx-users] a warning in grompp   Banafsheh Mehrazma
  • [gmx-users] a warning in grompp   Justin A. Lemkul
• [gmx-users] g_msd segmentation fault   Gavin Melaugh
  • [gmx-users] g_msd segmentation fault   Mark Abraham
    • [gmx-users] g_msd segmentation fault   Dommert Florian
• [gmx-users] How to answer in this mailing list?   Lara Bunte
  • [gmx-users] How to answer in this mailing list?   Mark Abraham
    • [gmx-users] How to answer in this mailing list?   Lara Bunte
• [gmx-users] Re: Lennard-Jones Interactions in Gromacs   Justin A. Lemkul
• [gmx-users] Imitation of the protein part   Steven Neumann
  • [gmx-users] Imitation of the protein part   Justin A. Lemkul
• [gmx-users] Acpype Parameter Error?   Alan
• [gmx-users] segmentation fault err   shilpa yadahalli
  • [gmx-users] segmentation fault err   Mark Abraham
• [gmx-users] folding of coordinates in trajectory files   Gavin Melaugh
  • [gmx-users] folding of coordinates in trajectory files   Jeff Armstrong
  • [gmx-users] folding of coordinates in trajectory files   Mark Abraham
• [gmx-users] em.mdp file   Lara Bunte
  • [gmx-users] em.mdp file   Marzinek, Jan
  • [gmx-users] em.mdp file   Justin A. Lemkul
    • [gmx-users] em.mdp file   Justin A. Lemkul
• [gmx-users] grompp error - bondedtypes   Lara Bunte
  • [gmx-users] grompp error - bondedtypes   Justin A. Lemkul
• [gmx-users] grompp error - bondedtypes   Justin A. Lemkul
• [gmx-users] grompp error - bondedtypes   Kukol, Andreas
• [gmx-users] spatial distribution function   prema.a at iiserpune.ac.in
• [gmx-users] g_bar bug with temperature   Tom Kirchner
  • [gmx-users] g_bar bug with temperature   Mark Abraham
• [gmx-users] Coupling groups   Steven Neumann
  • [gmx-users] Coupling groups   Mark Abraham
    • [gmx-users] Coupling groups   Steven Neumann
      • [gmx-users] Coupling groups   Mark Abraham
      • [gmx-users] Coupling groups   Steven Neumann
• [gmx-users] Cutoff settings for CHARMM36   Siew Wen Leong
• [gmx-users] one ligand in ATB   ahmet yıldırım
  • [gmx-users] one ligand in ATB   Tsjerk Wassenaar
• [gmx-users] Helix - Ligand binding - mimic stability   Steven Neumann
• [gmx-users] tpbconv to extend a simulation   Juliette N.
  • [gmx-users] tpbconv to extend a simulation   Justin A. Lemkul
• [gmx-users] grompp - Invalid command line argument   Lara Bunte
  • [gmx-users] grompp - Invalid command line argument   Justin A. Lemkul
• [gmx-users] g_fg2cg   dina dusti
  • [gmx-users] g_fg2cg   XAvier Periole
• [gmx-users] [ pairs ] section in topology   Lara Bunte
  • [gmx-users] [ pairs ] section in topology   Justin A. Lemkul
• [gmx-users] Two [ dihedrals ] Sections in Topology   Lara Bunte
  • [gmx-users] Two [ dihedrals ] Sections in Topology   Justin A. Lemkul
• [gmx-users] Missing Interactions in [ angles ] Section in Topology   Lara Bunte
  • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Justin A. Lemkul
• [gmx-users] Missing Interactions in [ angles ] Section in Topology   Justin A. Lemkul
  • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Lara Bunte
    • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Peter C. Lai
      • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Justin A. Lemkul
      • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Peter C. Lai
      • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Lara Bunte
      • [gmx-users] Missing Interactions in [ angles ] Section in Topology   Justin A. Lemkul
      • [gmx-users] Re: WHAM   lloyd riggs
• [gmx-users] Inconsistent shifts - is it something wrong with pbc   ming ma
  • [gmx-users] Inconsistent shifts - is it something wrong with pbc   Justin A. Lemkul
    • [gmx-users] Inconsistent shifts - is it something wrong with pbc   ming ma
• [gmx-users] Gromacs 3.3.3 on Lion Xgrid   Benjamin Hall
  • [gmx-users] Gromacs 3.3.3 on Lion Xgrid   Peter C. Lai
  • [gmx-users] Gromacs 3.3.3 on Lion Xgrid   Esztermann, Ansgar
    • [gmx-users] Gromacs 3.3.3 on Lion Xgrid   Mark Abraham
• [gmx-users] g_sdf -> and g_spatial   Dallas Warren
  • [gmx-users] g_sdf -> and g_spatial   Justin A. Lemkul
• [gmx-users] how to add custom potential function   smith bill
  • [gmx-users] how to add custom potential function   Mark Abraham
• [gmx-users] g_fg2cg   dina dusti
• [gmx-users] Umbrella_pull_simulation   shahid nayeem
• [gmx-users] Umbrella_pull_simulation   Justin A. Lemkul
  • [gmx-users] Umbrella_pull_simulation   shahid nayeem
    • [gmx-users] Umbrella_pull_simulation   shahid nayeem
      • [gmx-users] Umbrella_pull_simulation   Justin A. Lemkul
• [gmx-users] mdrun - topol.tpr   Lara Bunte
  • [gmx-users] mdrun - topol.tpr   Dommert Florian
  • [gmx-users] mdrun - topol.tpr   Siew Wen Leong
    • [gmx-users] mdrun - topol.tpr   Mark Abraham
• [gmx-users] HOW TO USE SILVER ATOMS IN AMBER99 FORCE FIELD   Kavosh Zandsalimi
  • [gmx-users] HOW TO USE SILVER ATOMS IN AMBER99 FORCE FIELD   Peter C. Lai
  • [gmx-users] HOW TO USE SILVER ATOMS IN AMBER99 FORCE FIELD   Mark Abraham
• [gmx-users] g_select problem (Invalid command line argument:)   leila karami
  • [gmx-users] g_select problem (Invalid command line argument:)   Justin A. Lemkul
• [gmx-users] hydrophobic and hydrophilic in implicit solvent   bo.shuang
  • [gmx-users] hydrophobic and hydrophilic in implicit solvent   Mark Abraham
• [gmx-users] grompp - Group protein not found   Lara Bunte
  • [gmx-users] grompp - Group protein not found   Peter C. Lai
    • [gmx-users] grompp - Group protein not found   Mark Abraham
      • [gmx-users] grompp - Group protein not found   Peter C. Lai
      • [gmx-users] grompp - Group protein not found   Mark Abraham
      • [gmx-users] grompp - Group protein not found   Lara Bunte
      • [gmx-users] grompp - Group protein not found   Mark Abraham
      • [gmx-users] grompp - Group protein not found   Lara Bunte
      • [gmx-users] grompp - Group protein not found   Kukol, Andreas
• [gmx-users] LINCS problem with EM and Virtual sites   francesco oteri
  • [gmx-users] LINCS problem with EM and Virtual sites   Mark Abraham
• [gmx-users] g_rotacf autocorrelation function   Yongchul Chung
  • [gmx-users] Re: g_rotacf autocorrelation function   Yongchul Chung
• [gmx-users] questions about Principal Component Analysis   Thomas Evangelidis
  • [gmx-users] Re: questions about Principal Component Analysis   Thomas Evangelidis
    • [gmx-users] Re: questions about Principal Component Analysis   Tsjerk Wassenaar
• [gmx-users] SUGAR-PIE: Scripted Utility to Get Atomic Resolution by Positional Interpolation/Extrapolation   Ángel Piñeiro
• [gmx-users] hydrophobic and hydrophilic in implicit solvent   bo.shuang
  • [gmx-users] hydrophobic and hydrophilic in implicit solvent   Justin A. Lemkul
• [gmx-users] Periodic molecules and minimum bonded cut-off   Andrew DeYoung
  • [gmx-users] Periodic molecules and minimum bonded cut-off   Justin A. Lemkul
  • [gmx-users] Periodic molecules and minimum bonded cut-off   Mark Abraham
• [gmx-users] g_select problem (Invalid command line argument:)   leila karami
  • [gmx-users] g_select problem (Invalid command line argument:)   Tsjerk Wassenaar
• [gmx-users] Residue 'NAG' not found in residue topology database   pragna lakshmi
• [gmx-users] g_select problem (Invalid command line argument:)   Mark Abraham
• [gmx-users] Residue 'NAG' not found in residue topology database   Mark Abraham
• [gmx-users] charm to gromacs   francesco oteri
  • [gmx-users] Fwd: charm to gromacs   francesco oteri
• [gmx-users] How to input multiple trr files?   a a
  • [gmx-users] How to interpret the cosine content result?   a a
• [gmx-users] How to input multiple trr files?   Mark Abraham
  • [gmx-users] How to input multiple trr files?   a a
    • [gmx-users] How to input multiple trr files?   francesco oteri
• [gmx-users] g_energy Kinetic Energy   Hovakim Grabski
  • [gmx-users] g_energy Kinetic Energy   Justin A. Lemkul
• [gmx-users] How to input multiple trr files?   Mark Abraham
• [gmx-users] a request regarding pdb2gmx and specbond.dat   Ehud Schreiber
  • [gmx-users] a request regarding pdb2gmx and specbond.dat   francesco oteri
• [gmx-users] g_select vs trjorder   leila karami
• [gmx-users] Umbrella Sampling - Ligand Protein   Steven Neumann
  • [gmx-users] Umbrella Sampling - Ligand Protein   Justin A. Lemkul
    • [gmx-users] Umbrella Sampling - Ligand Protein   Steven Neumann
      • [gmx-users] Umbrella Sampling - Ligand Protein   Steven Neumann
      • [gmx-users] Umbrella Sampling - Ligand Protein   Justin A. Lemkul
      • [gmx-users] Umbrella Sampling - Ligand Protein   Steven Neumann
• [gmx-users] g_select vs trjorder   leila karami
  • [gmx-users] g_select vs trjorder   Justin A. Lemkul
• [gmx-users] Umbrella Sampling - Protein Ligand   Steven Neumann
• [gmx-users] g_select vs trjorder   leila karami
  • [gmx-users] g_select vs trjorder   Justin A. Lemkul
• [gmx-users] g_select vs trjorder   leila karami
  • [gmx-users] g_select vs trjorder   Justin A. Lemkul
• [gmx-users] g_select vs trjorder   leila karami
  • [gmx-users] Read mdcrd from AMBER ---> Error Message   a a
    • [gmx-users] Read mdcrd from AMBER ---> Error Message   francesco oteri
    • [gmx-users] Read mdcrd from AMBER ---> Error Message   Mark Abraham
• [gmx-users] Periodic molecules and minimum bonded cut-off   Andrew DeYoung
• [gmx-users] Radial distribution function by COM   Fabian Casteblanco
  • [gmx-users] Radial distribution function by COM   Justin A. Lemkul
• [gmx-users] (no subject)   saly jackson
  • [gmx-users] (no subject)   Justin A. Lemkul
• [gmx-users] 'not allocate memory'   saly jackson
• [gmx-users] Martini   dina dusti
  • [gmx-users] Martini   Dariush Mohammadyani
    • [gmx-users] Martini   dina dusti
      • [gmx-users] Martini   Dariush Mohammadyani
      • [gmx-users] Martini   dina dusti
• [gmx-users] Re: Re: hydrophobic and hydrophilic in implicit solvent   bo.shuang
  • [gmx-users] Re: Re: hydrophobic and hydrophilic in implicit solvent   Mark Abraham
• [gmx-users] g_helix not recognizing protein backbone   MPID
  • [gmx-users] g_helix not recognizing protein backbone   Justin A. Lemkul
    • [gmx-users] Re: g_helix not recognizing protein backbone   MPID
      • [gmx-users] I need a tutorial for gromacs-4.0.5   Dialing Pretty
      • [gmx-users] I need a tutorial for gromacs-4.0.5   Mark Abraham
      • [gmx-users] I need a tutorial for gromacs-4.0.5   Dialing Pretty
      • [gmx-users] I need a tutorial for gromacs-4.0.5   Mark Abraham
      • [gmx-users] Force field   Dialing Pretty
      • [gmx-users] Force field   Justin A. Lemkul
  • [gmx-users] g_helix not recognizing protein backbone   Mark Abraham
• [gmx-users] 'not allocate memory'   saly jackson
  • [gmx-users] 'not allocate memory'   Justin A. Lemkul
• [gmx-users] Recommended protocol for cooling down temperature in 50 K steps   Andrew DeYoung
  • [gmx-users] Recommended protocol for cooling down temperature in 50 K steps   Justin A. Lemkul
    • [gmx-users] Recommended protocol for cooling down temperature in 50 K steps   Mark Abraham
• [gmx-users] Cluster analysis   IISER_Minal
  • [gmx-users] Cluster analysis   Dallas Warren
    • [gmx-users] RE: Cluster analysis   minal
• [gmx-users] Using CHARMM27 with TIP4PEW   Karl Debiec
• [gmx-users] LINCS Fatal error   rama david
  • [gmx-users] LINCS Fatal error   Mark Abraham
• [gmx-users] Atom O5 not found in residue seq.nr. 1 while adding atom   pragna lakshmi
  • [gmx-users] Re: Atom O5 not found in residue seq.nr. 1 while adding atom   pragna lakshmi
    • [gmx-users] Re: Atom O5 not found in residue seq.nr. 1 while adding atom   Mark Abraham
      • [gmx-users] Re: Atom O5 not found in residue seq.nr. 1 while adding atom   pragna lakshmi
• [gmx-users] Segmentation fault   rama david
  • [gmx-users] Segmentation fault   Mark Abraham
• [gmx-users] g_fg2cg   dina dusti
• [gmx-users] some questions about side chain dihedral angle sampling   mircial at sjtu.edu.cn
  • [gmx-users] Re: some questions about side chain dihedral angle sampling   mircial at sjtu.edu.cn
• [gmx-users] GROMACS roadmap? GROMACS - OpenMM collaboration?   Marco Moller
• [gmx-users] Umbrella sampling to calculate binding energy under martini force field   Du Jiangfeng (BIOCH)
• [gmx-users] GROMACS stalls for NPT simulation when using -npme and -dd flags   Stephen Cox
  • [gmx-users] Gromacs installation in Cygwin   Dialing Pretty
    • [gmx-users] -p topol.top input/output error   Dialing Pretty
      • [gmx-users] -p topol.top input/output error   Mark Abraham
      • [gmx-users] -p topol.top input/output error   Dialing Pretty
      • [gmx-users] -p topol.top input/output error   Mark Abraham
      • [gmx-users] -p topol.top input/output error   Dialing Pretty
      • [gmx-users] uninstall gromacs   Dialing Pretty
      • [gmx-users] uninstall gromacs   Mark Abraham
    • [gmx-users] Gromacs installation in Cygwin   Mark Abraham
  • [gmx-users] GROMACS stalls for NPT simulation when using -npme and -dd flags   Mark Abraham
• [gmx-users] Bus error   Erik Marklund
• [gmx-users] Error Message when installing GROMACS.   a a
  • [gmx-users] Error Message when installing GROMACS.   Mark Abraham
    • [gmx-users] Error Message in Make clean command for installation.   a a
      • [gmx-users] Error Message in Make clean command for installation.   Mark Abraham
• [gmx-users] Reading starting velocities   Ignacio Fernández Galván
• [gmx-users] About martini   rama david
  • [gmx-users] About martini   francesca vitalini
    • [gmx-users] About martini   XAvier Periole
• [gmx-users] Vi plugin for Gromacs files   hubert santuz
  • [gmx-users] Vi plugin for Gromacs files   Szilárd Páll
• [gmx-users] Re: gmx-users Digest, Vol 95, Issue 60   Stephen Cox
  • [gmx-users] Re:g_energy   lloyd riggs
    • [gmx-users] Re:g_energy   Oliver Stueker
      • [gmx-users] Re:g_energy   lloyd riggs
  • [gmx-users] Re: gmx-users Digest, Vol 95, Issue 60   Stephen Cox
• [gmx-users] Umbrella sampling multiple pull groups   Sabine Reisser
  • [gmx-users] Umbrella sampling multiple pull groups   Sabine Reisser
• [gmx-users] not allocate memory and genconf   saly jackson
• [gmx-users] genconf   saly jackson
  • [gmx-users] genconf   David van der Spoel
    • [gmx-users] genconf   Justin A. Lemkul
• [gmx-users] Looking for a GROMACS expert for summer'2012 intern/co-op   MQ
• [gmx-users] genconf   saly jackson
  • [gmx-users] genconf   Justin A. Lemkul
• [gmx-users] Dielectric constant calculation with Gromacs-3.3.1   Liang Shi
  • [gmx-users] Dielectric constant calculation with Gromacs-3.3.1   David van der Spoel
    • [gmx-users] Re: Dielectric constant calculation with Gromacs-3.3.1   Liang
      • [gmx-users] Re: Dielectric constant calculation with Gromacs-3.3.1   David van der Spoel
• [gmx-users] (no subject)   saly jackson
• [gmx-users] 'genconf'   saly jackson
• [gmx-users] Charge groups for particle insertion   Tina Wang
  • [gmx-users] Charge groups for particle insertion   João M. Damas
• [gmx-users] genconf, grompp   saly jackson
  • [gmx-users] genconf, grompp   Justin A. Lemkul
• [gmx-users] error message during make after gtomacs configuration   Dialing Pretty
  • [gmx-users] error message during make after gtomacs configuration   Mark Abraham
    • [gmx-users] error message during make after gtomacs configuration   Dialing Pretty
      • [gmx-users] error message during make after gtomacs configuration   Mark Abraham
• [gmx-users] g_dist without output file   Atila Petrosian
  • [gmx-users] g_dist without output file   lina
• [gmx-users] g_spatial (gromacs 4.5 manual)   Atila Petrosian
• [gmx-users] g_dist without output file   Atila Petrosian
  • [gmx-users] g_dist without output file   lina
• [gmx-users] g_dist without output file   Atila Petrosian
  • [gmx-users] g_dist without output file   lina
  • [gmx-users] g_dist without output file   lina
    • [gmx-users] g_dist without output file   afsaneh maleki
• [gmx-users] genconf,grompp   saly jackson
  • [gmx-users] genconf,grompp   Justin A. Lemkul
• [gmx-users] Resources on simulation walls   Andrew DeYoung
  • [gmx-users] Resources on simulation walls   Francesco Oteri
• [gmx-users] Charge delocalization fullerene   R.Perez Garcia
• [gmx-users] Re: Resources on simulation walls   Dr. Vitaly V. Chaban
  • [gmx-users] gromacs 4.5.5 cygwin installation error message   Wholly Peach
    • [gmx-users] gromacs 4.5.5 cygwin installation error message   Peter C. Lai
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Mark Abraham
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Wholly Peach
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Peter C. Lai
      • Fw: [gmx-users] gromacs 4.5.5 cygwin installation error message   Wholly Peach
      • Fw: [gmx-users] gromacs 4.5.5 cygwin installation error message   Mark Abraham
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Wholly Peach
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Mark Abraham
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Wholly Peach
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Peter C. Lai
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Peter C. Lai
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Mark Abraham
      • [gmx-users] gromacs 4.5.5 cygwin installation error message   Wholly Peach
      • [gmx-users] Re:g_enemat   lloyd riggs
      • [gmx-users] on the RAM capacity needed for GROMACS   Wholly Peach
      • [gmx-users] on the RAM capacity needed for GROMACS   Mark Abraham
• [gmx-users] genconf, grompp   saly jackson
  • [gmx-users] genconf, grompp   saly jackson
    • [gmx-users] genconf, grompp   Mark Abraham
• [gmx-users] g_dist without output file   Atila Petrosian
  • [gmx-users] g_dist without output file   Mark Abraham
• [gmx-users] gromacs 4.5.5 cygwin installation error message   Peter C. Lai
• [gmx-users] Charge delocalization fullerene   R.Perez Garcia
  • [gmx-users] Charge delocalization fullerene   Tsjerk Wassenaar
• [gmx-users] protein-ligand tutorial problem   rama david
  • [gmx-users] protein-ligand tutorial problem   Justin A. Lemkul
• [gmx-users] genbox,genconf   saly jackson
  • [gmx-users] genbox,genconf   Justin A. Lemkul
• [gmx-users] Installing g_mdmat from Gromacs analysis package   Suhaila Haji Mohd Hussin
  • [gmx-users] Installing g_mdmat from Gromacs analysis package   Justin A. Lemkul
• [gmx-users] Calculating the center of mass of a molecule   Andrew DeYoung
  • [gmx-users] Calculating the center of mass of a molecule   Justin A. Lemkul
• [gmx-users] Segmentation fault   saly jackson
  • [gmx-users] Segmentation fault   Justin A. Lemkul
• [gmx-users] Gromacs 4.5.5 GPU Error   TH Chew
  • [gmx-users] Gromacs 4.5.5 GPU Error   Szilárd Páll
• [gmx-users] Umbrella Sampling - Ligand Protein   Justin A. Lemkul
  • [gmx-users] Umbrella Sampling - Ligand Protein   Steven Neumann
    • [gmx-users] Umbrella Sampling - Ligand Protein   Justin A. Lemkul
• [gmx-users] Generation of the Distance Restraints   James Starlight
  • [gmx-users] Generation of the Distance Restraints   francesca vitalini
    • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   francesca vitalini
      • [gmx-users] Generation of the Distance Restraints   Justin A. Lemkul
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Justin A. Lemkul
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Generation of the Distance Restraints   James Starlight
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
      • [gmx-users] Re:g_energy g_enemat   lloyd riggs
      • [gmx-users] Generation of the Distance Restraints   Mark Abraham
  • [gmx-users] Generation of the Distance Restraints   Mark Abraham
• [gmx-users] Literature reading on DispCorr for energy and pressure   Andrew DeYoung
  • [gmx-users] Literature reading on DispCorr for energy and pressure   Thomas Piggot
• [gmx-users] pull code - i-motif constant velocity pull   Raghav
• [gmx-users] pdb file   dina dusti
  • [gmx-users] pdb file   Justin A. Lemkul
    • [gmx-users] pdb file   dina dusti
      • [gmx-users] pdb file   Oliver Stueker
      • [gmx-users] pdb file   dina dusti
• [gmx-users] There was 1 error in input file(s)   saly jackson
  • [gmx-users] There was 1 error in input file(s)   David van der Spoel
• [gmx-users] Ques   Xianwei Wang
  • [gmx-users] Ques   Tsjerk Wassenaar
    • [gmx-users] Ques   Xianwei Wang
• [gmx-users] help on replica exchange dynamics with gromacs   Raghuvir Pissurlenkar
  • [gmx-users] help on replica exchange dynamics with gromacs   Mark Abraham
• [gmx-users] RMSD sudden jump   Davide Mercadante
  • [gmx-users] RMSD sudden jump   Tsjerk Wassenaar
    • [gmx-users] RMSD sudden jump   Davide Mercadante
      • [gmx-users] RMSD sudden jump   Davide Mercadante
• [gmx-users] GROMACS stalls for NPT simulation when using -npme and -dd flags   Stephen Cox
  • [gmx-users] GROMACS stalls for NPT simulation when using -npme and -dd flags   Szilárd Páll
• [gmx-users] Reg final error   RAMYA NAGA
  • [gmx-users] Reg final error   Justin A. Lemkul
• [gmx-users] addition of two solvents   Nidhi Katyal
  • [gmx-users] addition of two solvents   Justin A. Lemkul
• [gmx-users] How the pressure is computed   Andrew DeYoung
  • [gmx-users] How the pressure is computed   Justin A. Lemkul
• [gmx-users] pme note   ahmet yıldırım
  • [gmx-users] pme note   Mark Abraham
• [gmx-users] Unreadable trajetory   Jernej Zidar
  • [gmx-users] Unreadable trajetory   Mark Abraham
• [gmx-users] Regarding PCA   rama david
• [gmx-users] Importance of -rcon and -dd options when using mdrun with mpi.   PAVAN PAYGHAN
  • [gmx-users] Importance of -rcon and -dd options when using mdrun with mpi.   Mark Abraham
• [gmx-users] clashes   Dariush Mohammadyani
  • [gmx-users] clashes   Justin A. Lemkul
    • [gmx-users] clashes   Dariush Mohammadyani
      • [gmx-users] clashes   Justin A. Lemkul
• [gmx-users] Re: How the pressure is computed   Andrew DeYoung
  • [gmx-users] Re: How the pressure is computed   Justin A. Lemkul
• Fwd: [gmx-users] Generation of the Distance Restraints   James Starlight
  • Fwd: [gmx-users] Generation of the Distance Restraints   Justin A. Lemkul
    • Fwd: [gmx-users] Generation of the Distance Restraints   James Starlight
      • Fwd: [gmx-users] Generation of the Distance Restraints   Justin A. Lemkul
• [gmx-users] g_sas   afsaneh maleki
• [gmx-users] tpbconv and tpr file problem...   Anthony Cruz Balberdi
  • [gmx-users] tpbconv and tpr file problem...   Mark Abraham
    • [gmx-users] gromacs 3.3.3 and gromacs 4.5.5   Wholly Peach
      • [gmx-users] gromacs 3.3.3 and gromacs 4.5.5   Mark Abraham
      • [gmx-users] pdb2gmx error message   Wholly Peach
      • [gmx-users] genion -pname no NA molecule (sodium) type   Wholly Peach
      • [gmx-users] genion -pname no NA molecule (sodium) type   Mark Abraham
      • [gmx-users] genion -pname no NA molecule (sodium) type   Wholly Peach
      • [gmx-users] genion -pname no NA molecule (sodium) type   Mark Abraham
      • [gmx-users] Equilibriation nvt.mdp error   Wholly Peach
      • [gmx-users] Equilibriation nvt.mdp error   Tsjerk Wassenaar
      • [gmx-users] newest version of gromacs under cygwin   Wholly Peach
      • [gmx-users] newest version of gromacs under cygwin   Mark Abraham
    • [gmx-users] tpbconv and tpr file problem...   Anthony Cruz Balberdi
      • [gmx-users] tpbconv and tpr file problem...   Mark Abraham
      • [gmx-users] tpbconv and tpr file problem...   Anthony Cruz Balberdi
• [gmx-users] Where in the source code is the .edr file written?   Andrew DeYoung
  • [gmx-users] Where in the source code is the .edr file written?   Mark Abraham
• [gmx-users] Energy exclusions for freeze groups, and the pressure   Andrew DeYoung
• [gmx-users] hydrogen hydrogen interaction   bo.shuang
  • [gmx-users] hydrogen hydrogen interaction   Justin A. Lemkul
  • [gmx-users] hydrogen hydrogen interaction   Peter C. Lai
• [gmx-users] using MPI   cuong nguyen
  • [gmx-users] using MPI   Mark Abraham
  • [gmx-users] using MPI   Erik Marklund
    • [gmx-users] using MPI   cuong nguyen
      • [gmx-users] using MPI   Mark Abraham
• [gmx-users] Re.Importance of -rcon and -dd options when   PAVAN PAYGHAN
  • [gmx-users] Re.Importance of -rcon and -dd options when   Mark Abraham
• [gmx-users] Problems with simulation on multi-nodes cluster   James Starlight
  • [gmx-users] Problems with simulation on multi-nodes cluster   Mark Abraham
  • [gmx-users] Problems with simulation on multi-nodes cluster   Peter C. Lai
    • [gmx-users] Problems with simulation on multi-nodes cluster   Mark Abraham
      • [gmx-users] Problems with simulation on multi-nodes cluster   James Starlight
      • [gmx-users] Problems with simulation on multi-nodes cluster   James Starlight
      • [gmx-users] Problems with simulation on multi-nodes cluster   Mark Abraham
• [gmx-users] re: Unreadable trajectory [solved]   Jernej Zidar
• [gmx-users] 4.6 development version   SebastianWaltz
  • [gmx-users] 4.6 development version   lloyd riggs
  • [gmx-users] 4.6 development version   Szilárd Páll
• [gmx-users] question about replica exchange   Asaf Farhi
• [gmx-users] center the system on specific atoms type   R.Perez Garcia
  • [gmx-users] center the system on specific atoms type   Tsjerk Wassenaar
• [gmx-users] center the system on specific atoms type   R.Perez Garcia
  • [gmx-users] center the system on specific atoms type   Tsjerk Wassenaar
• [gmx-users] Announcement: Large biomolecule benchmark report   Hannes Loeffler
  • [gmx-users] Announcement: Large biomolecule benchmark report   David van der Spoel
    • [gmx-users] Announcement: Large biomolecule benchmark report   Hannes Loeffler
  • [gmx-users] Announcement: Large biomolecule benchmark report   Szilárd Páll
• [gmx-users] Information on .mdp files   Lara Bunte
  • [gmx-users] Information on .mdp files   Justin A. Lemkul
  • AW: [gmx-users] Information on .mdp files   Rausch, Felix
• [gmx-users] g_sas   afsaneh maleki
  • [gmx-users] g_sas   Justin A. Lemkul
    • [gmx-users] g_sas   afsaneh maleki
      • [gmx-users] g_sas   Justin A. Lemkul
• [gmx-users] bug in g_msd   Gavin Melaugh
  • [gmx-users] bug in g_msd   Justin A. Lemkul
• [gmx-users] [Fwd: bug in g_msd]   Gavin Melaugh
• [gmx-users] Re: Importance of -rcon and -dd options   PAVAN PAYGHAN
• [gmx-users] Structural features for LINCS application   Francesco Oteri
  • [gmx-users] Structural features for LINCS application   Mark Abraham
    • [gmx-users] Structural features for LINCS application   Francesco Oteri
• [gmx-users] ***Extended deadline: March 26*** COMETS 2012 - 3rd International Track on Collaborative Modeling and Simulation - Call for Papers   Daniele Gianni
• [gmx-users] Re: on the RAM capacity needed for GROMACS   Dr. Vitaly V. Chaban
• [gmx-users] Re: Energy exclusions for freeze groups, and the pressure   Andrew DeYoung
• [gmx-users] Scaling/performance on Gromacs 4   Szilárd Páll
• [gmx-users] Simulated Annealing Protocol...   rama david
  • [gmx-users] Simulated Annealing Protocol...   Justin A. Lemkul
    • [gmx-users] Simulated Annealing Protocol...   rama david
      • [gmx-users] Simulated Annealing Protocol...   Justin A. Lemkul
      • [gmx-users] Simulated Annealing Protocol...   bipin singh
      • [gmx-users] Simulated Annealing Protocol...   Justin A. Lemkul
• [gmx-users] Announcement: Large biomolecule benchmark report   chris.neale at utoronto.ca
• [gmx-users] Re: Simulated Annealing Protocol   Dr. Vitaly V. Chaban
• [gmx-users] cluster analysis of flexible peptide trajectory   Thomas Evangelidis
• [gmx-users] AZH (AZIDOHOMOALANINE) or C4 H8 N4 O2   SebastianWaltz
• [gmx-users] Gromacs installation question: Where is my Gromacs?   bestenborstel
  • [gmx-users] Gromacs installation question: Where is my Gromacs?   Justin A. Lemkul
    • [gmx-users] Gromacs installation question: Where is my Gromacs?   bestenborstel
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   David van der Spoel
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   bestenborstel
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   David van der Spoel
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   bestenborstel
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   Justin A. Lemkul
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   bestenborstel
      • [gmx-users] Gromacs installation question: Where is my Gromacs?   Justin A. Lemkul
  • [gmx-users] Gromacs installation question: Where is my Gromacs?   David van der Spoel
• [gmx-users] g_sas; could not find a Van der Waals radius   afsaneh maleki
  • [gmx-users] g_sas; could not find a Van der Waals radius   Justin A. Lemkul
• [gmx-users] grompp warning with SHAKE, but ok with LINCS   D_Roy
  • [gmx-users] grompp warning with SHAKE, but ok with LINCS   Tsjerk Wassenaar
• [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   qiancheng shen
  • [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   David van der Spoel
    • [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   qiancheng shen
      • [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   David van der Spoel
      • [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   qiancheng shen
      • [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   Justin A. Lemkul
      • [gmx-users] How to do Normal Modes Analysis with Gromacs4.5.5?   qiancheng shen
• [gmx-users] opls topology for butanol, hexanol, heptanol   Zhuyi Xue
  • [gmx-users] opls topology for butanol, hexanol, heptanol   Justin A. Lemkul
• [gmx-users] entropic contribution from Umbrella Sampling   Steven Neumann
• [gmx-users] Energy minimization of crystal structure with water   NG HUI WEN
  • [gmx-users] Energy minimization of crystal structure with water   Mark Abraham
    • [gmx-users] Energy minimization of crystal structure with water   NG HUI WEN
• [gmx-users] HBonds between molecules   Hovakim Grabski
  • [gmx-users] HBonds between molecules   Justin A. Lemkul
• [gmx-users] Problem Installing Gromacs   Suhaila Haji Mohd Hussin
  • [gmx-users] Problem Installing Gromacs   Justin A. Lemkul
    • [gmx-users] Problem Installing Gromacs   Suhaila Haji Mohd Hussin
• [gmx-users] electrostatics in liquid/vapor interface   Dr. Vitaly V. Chaban
• [gmx-users] Problem installing Gromacs: What next?   Suhaila Haji Mohd Hussin
  • [gmx-users] FW: Problem installing Gromacs: What next?   Suhaila Haji Mohd Hussin
    • [gmx-users] FW: Problem installing Gromacs: What next?   Justin A. Lemkul
  • [gmx-users] Problem installing Gromacs: What next?   Justin A. Lemkul
• [gmx-users] FW: Problem installing Gromacs: What next?   Justin A. Lemkul
  • [gmx-users] FW: Problem installing Gromacs: What next?   Suhaila Haji Mohd Hussin
    • FW: [gmx-users] FW: Problem installing Gromacs: What next?   Suhaila Haji Mohd Hussin
    • [gmx-users] FW: Problem installing Gromacs: What next?   Justin A. Lemkul
• [gmx-users] number of coordinates in coordinate file does not match topology   Acoot Brett
  • [gmx-users] number of coordinates in coordinate file does not match topology   Justin A. Lemkul
• Fw: [gmx-users] number of coordinates in coordinate file does not match topology   Acoot Brett
• Fw: [gmx-users] number of coordinates in coordinate file does not match topology   Tsjerk Wassenaar
• [gmx-users] Force constant - Umbrella Sampling   Steven Neumann
  • [gmx-users] on "tcoupl= V-rescale"   Acoot Brett
    • [gmx-users] on "tcoupl= V-rescale"   Tsjerk Wassenaar
      • [gmx-users] on "tcoupl= V-rescale"   Tsjerk Wassenaar
    • [gmx-users] on -t nvt.cpt in the Justine Lemkul tutorial   Acoot Brett
      • [gmx-users] on -t nvt.cpt in the Justine Lemkul tutorial   Marzinek, Jan
      • [gmx-users] on -t nvt.cpt in the Justine Lemkul tutorial   Tsjerk Wassenaar
  • [gmx-users] Force constant - Umbrella Sampling   lloyd riggs
• [gmx-users] on "tcoupl= V-rescale"   Tsjerk Wassenaar
• [gmx-users] on installation of gromacs 455   Acoot Brett
• [gmx-users] Editing potential parameters   Asaf Farhi
  • [gmx-users] Editing potential parameters   Mark Abraham
• [gmx-users] nrexcl in topology   Lara Bunte
  • [gmx-users] nrexcl in topology   R.Perez Garcia
  • [gmx-users] nrexcl in topology   Mark Abraham
• [gmx-users] extending simulation   priya thiyagarajan
  • [gmx-users] extending simulation   Mark Abraham
• [gmx-users] g_msd with input by trjconv -pbc nojump:a concern   Ioannis Beis
  • [gmx-users] g_msd with input by trjconv -pbc nojump:a concern   Dommert Florian
• [gmx-users] problem with g_bar   Tom Kirchner
  • [gmx-users] problem with g_bar   Berk Hess
• [gmx-users] Help regarding running DSSP in gmx   chandran karunakaran
  • [gmx-users] Help regarding running DSSP in gmx   Tsjerk Wassenaar
  • [gmx-users] Help regarding running DSSP in gmx   Mark Abraham
• [gmx-users] Group protein not found in index file   Lara Bunte
  • [gmx-users] Group protein not found in index file   Justin A. Lemkul
• [gmx-users] Group protein not found in index file   Justin A. Lemkul
• [gmx-users] Trjconv PDB files define solvent as "ATOM"?   John Ladasky
  • [gmx-users] Trjconv PDB files define solvent as "ATOM"?   Mark Abraham
  • [gmx-users] a question related to productioon MD   Acoot Brett
    • [gmx-users] a question related to productioon MD   Mark Abraham
• [gmx-users] Trjconv PDB files define solvent as "ATOM"?   John Ladasky
• [gmx-users] Trjconv PDB files define solvent as "ATOM"?   Tsjerk Wassenaar
• [gmx-users] regarding rmsd value   priya thiyagarajan
• [gmx-users] Re: RE: problem with g_bar   Tom Kirchner
  • [gmx-users] Re: RE: problem with g_bar   Berk Hess
• [gmx-users] Statistical error of Umbrella Sampling   Steven Neumann
  • [gmx-users] Statistical error of Umbrella Sampling   Jochen Hub
• [gmx-users] Re: g_msd with input by trjconv -pbc nojump:a concern   Ioannis Beis
  • [gmx-users] Re: g_msd with input by trjconv -pbc nojump:a concern   Tsjerk Wassenaar
  • [gmx-users] Re: g_msd with input by trjconv -pbc nojump:a concern   Dommert Florian
• [gmx-users] Incorrect number of parameters - found 2, expected 5 or 5 for LJC-14 q   Biswajit Gorai
  • [gmx-users] Incorrect number of parameters - found 2, expected 5 or 5 for LJC-14 q   Justin A. Lemkul
    • [gmx-users] Incorrect number of parameters - found 2, expected 5 or 5 for LJC-14 q   Biswajit Gorai
      • [gmx-users] Incorrect number of parameters - found 2, expected 5 or 5 for LJC-14 q   Justin A. Lemkul
• [gmx-users] Ion parameters in OPLS AA force field   Dommert Florian
  • [gmx-users] Ion parameters in OPLS AA force field   Thomas Piggot
    • [gmx-users] Ion parameters in OPLS AA force field   Dommert Florian
• [gmx-users] Editing the functions of amber   Asaf Farhi
  • [gmx-users] Editing the functions of amber   Matthew Zwier
    • [gmx-users] Editing the functions of amber   Asaf Farhi
      • [gmx-users] Editing the functions of amber   Mark Abraham
      • [gmx-users] Editing the functions of amber   Asaf Farhi
      • [gmx-users] Editing the functions of amber   Mark Abraham
      • [gmx-users] Editing the functions of amber   Asaf Farhi
      • [gmx-users] Editing the functions of amber   Mark Abraham
      • [gmx-users] Editing the functions of amber   Asaf Farhi
      • [gmx-users] Editing the functions of amber   Asaf Farhi
• [gmx-users] (no subject)   Anik Sen
  • [gmx-users] (no subject)   Justin A. Lemkul
• [gmx-users] Dimethyl Sulfoxide Electromagnetic Absorbance   Nancy
  • [gmx-users] Dimethyl Sulfoxide Electromagnetic Absorbance   David van der Spoel
    • [gmx-users] Dimethyl Sulfoxide Electromagnetic Absorbance   Nancy
• [gmx-users] resolution of cygwin installation issues   Mark Abraham
  • [gmx-users] resolution of cygwin installation issues   Acoot Brett
    • [gmx-users] resolution of cygwin installation issues   Mark Abraham
• [gmx-users] Re: RE: RE: problem with g_bar   Tom Kirchner
• [gmx-users] Re: Re: Ion parameters in OPLS AA force field   Kathleen Kirchner
  • [gmx-users] Re: Re: Ion parameters in OPLS AA force field   Dommert Florian
• [gmx-users] problem in oplsaa ffbonded.itp   francesco oteri
  • [gmx-users] problem in oplsaa ffbonded.itp   Justin A. Lemkul
    • [gmx-users] problem in oplsaa ffbonded.itp   francesco oteri
      • [gmx-users] problem in oplsaa ffbonded.itp   Mark Abraham
• [gmx-users] regarding em potential energy positive   priya thiyagarajan
  • [gmx-users] regarding em potential energy positive   Mark Abraham
    • [gmx-users] regarding em potential energy positive   Mark Abraham
  • [gmx-users] regarding em potential energy positive   Justin A. Lemkul
• [gmx-users] regarding em potential energy positive   priya thiyagarajan
  • [gmx-users] regarding em potential energy positive   Justin A. Lemkul
• [gmx-users] regarding potential energy positive   priya thiyagarajan
  • [gmx-users] on installation Xmgrace under cygwin   Acoot Brett
    • [gmx-users] on installation Xmgrace under cygwin   Mark Abraham
      • [gmx-users] on installation Xmgrace under cygwin   Acoot Brett
      • [gmx-users] on xmgrace   Acoot Brett
      • [gmx-users] on xmgrace   Mark Abraham
      • [gmx-users] on gromacs force field   Acoot Brett
      • [gmx-users] on gromacs force field   Dallas Warren
      • [gmx-users] on installation Xmgrace under cygwin   Mark Abraham
• [gmx-users] bond managment in grompp   francesco oteri
  • [gmx-users] bond managment in grompp   Mark Abraham
    • [gmx-users] bond managment in grompp   francesco oteri
      • [gmx-users] bond managment in grompp   Mark Abraham
• [gmx-users] Running DSSP program   chandran karunakaran
• [gmx-users] continue replica exchange MD   Kukol, Andreas
  • [gmx-users] continue replica exchange MD   Mark Abraham
  • [gmx-users] continue replica exchange MD   lina
    • [gmx-users] continue replica exchange MD   Erik Marklund
• [gmx-users] fatal error   Gavin Melaugh
  • [gmx-users] fatal error   Kukol, Andreas
• [gmx-users] Neigborsearching, Electrostatics and vdw options   ahmet yıldırım
  • [gmx-users] Re: Neigborsearching, Electrostatics and vdw options   ahmet yıldırım
    • [gmx-users] Re: Neigborsearching, Electrostatics and vdw options   Oliver Stueker
      • [gmx-users] Re: Neigborsearching, Electrostatics and vdw options   ahmet yıldırım
      • [gmx-users] Re: Neigborsearching, Electrostatics and vdw options   Justin A. Lemkul
• [gmx-users] Creating an atomtype where all nonbonded interactions are enumerated   Andrew DeYoung
  • [gmx-users] Creating an atomtype where all nonbonded interactions are enumerated   Justin A. Lemkul
• [gmx-users] Re: Creating an atomtype where all nonbonded interactions are enumerated   Andrew DeYoung
  • [gmx-users] Re: Creating an atomtype where all nonbonded interactions are enumerated   Justin A. Lemkul
• [gmx-users] Generating topology   Spring buds
  • [gmx-users] pdb2gmx input file error   Acoot Brett
    • [gmx-users] pdb2gmx input file error   Tsjerk Wassenaar
    • [gmx-users] a question related to energy minimization "mdrun -v -deffnm em"   Acoot Brett
      • [gmx-users] a question related to energy minimization "mdrun -v -deffnm em"   Peter C. Lai
  • [gmx-users] Generating topology   lina
  • [gmx-users] Generating topology   Mark Abraham
• [gmx-users] pdb2gmx input file error   Acoot Brett
  • [gmx-users] pdb2gmx input file error   Mark Abraham
• [gmx-users] Erroneous bond in average pdb   rama david
  • [gmx-users] Erroneous bond in average pdb   Mark Abraham
• [gmx-users] Re: quasi-harmonic entropy calculation   wmiranda at estudiantes.fbio.uh.cu
  • [gmx-users] Re: quasi-harmonic entropy calculation   David van der Spoel
• [gmx-users] (no subject)   Ashalatha Sreshty
• [gmx-users] Error: no domain decomposition, Source code file: domdec.c, line: 6436   Ashalatha Sreshty
  • [gmx-users] Error: no domain decomposition, Source code file: domdec.c, line: 6436   Mark Abraham
• [gmx-users] Box Size in MD   Lara Bunte
  • [gmx-users] Box Size in MD   Dariush Mohammadyani
  • [gmx-users] Box Size in MD   Tsjerk Wassenaar
  • [gmx-users] Box Size in MD   Justin A. Lemkul
• [gmx-users] submision   wmiranda at estudiantes.fbio.uh.cu
• [gmx-users] Re: Williams   wmiranda at estudiantes.fbio.uh.cu
• [gmx-users] Re: Creating an atomtype where all nonbonded interactions are enumerated   Andrew DeYoung
  • [gmx-users] Re: Creating an atomtype where all nonbonded interactions are enumerated   Justin A. Lemkul
• [gmx-users] g_wham position 0   rainy908
  • [gmx-users] g_wham position 0   Jochen Hub
• [gmx-users] Re: Creating an atomtype where all nonbonded interactions are enumerated   Andrew DeYoung
  • [gmx-users] Re: Creating an atomtype where all nonbonded interactions are enumerated   Justin A. Lemkul
• [gmx-users] radial distribution normal in g_order   Denny Frost
• [gmx-users] RE: quasi-harmonic entropy calculation   Ran Friedman
  • [gmx-users] a question related to trjconv and pdb file extraction   Acoot Brett
    • [gmx-users] a question related to trjconv and pdb file extraction   Justin A. Lemkul
• [gmx-users] Re: mass-weighted analysis   wmiranda at estudiantes.fbio.uh.cu
• [gmx-users] Structure averaging problem using g_rmsf   Spring buds
  • [gmx-users] Structure averaging problem using g_rmsf   Justin A. Lemkul
    • [gmx-users] Structure averaging problem using g_rmsf   Spring buds
• [gmx-users] REMD equilibration   francesco oteri
  • [gmx-users] REMD equilibration   SebastianWaltz
  • [gmx-users] REMD equilibration   Kukol, Andreas
    • [gmx-users] REMD equilibration   francesco oteri
      • [gmx-users] REMD equilibration   Justin A. Lemkul
      • [gmx-users] REMD equilibration   Erik Marklund
• [gmx-users] BUG: Free energy calculation   Sabine Reisser
  • [gmx-users] BUG: Free energy calculation   Mark Abraham
    • [gmx-users] BUG: Free energy calculation   Sabine Reisser
      • [gmx-users] BUG: Free energy calculation   Michael Shirts
      • [gmx-users] BUG: Free energy calculation   Justin A. Lemkul
      • [gmx-users] BUG: Free energy calculation   Michael Shirts
• [gmx-users] genbox   Gavin Melaugh
  • [gmx-users] genbox   Justin A. Lemkul
    • [gmx-users] refcoord_scaling   Acoot Brett
      • [gmx-users] refcoord_scaling   Justin A. Lemkul
• [gmx-users] Charmm Cholesterol parameters - str to itp   Ricardo O. S. Soares
  • [gmx-users] Charmm Cholesterol parameters - str to itp   David van der Spoel
    • [gmx-users] Charmm Cholesterol parameters - str to itp   Ricardo O. S. Soares
• [gmx-users] parameters of em.mdp   ahmet yıldırım
  • [gmx-users] parameters of em.mdp   Justin A. Lemkul
    • [gmx-users] parameters of em.mdp   ahmet yıldırım
      • [gmx-users] parameters of em.mdp   Justin A. Lemkul
• [gmx-users] Equilibrate the water around my molecule   Lara Bunte
  • [gmx-users] Equilibrate the water around my molecule   Mark Abraham
    • [gmx-users] Equilibrate the water around my molecule   Lara Bunte
      • [gmx-users] Equilibrate the water around my molecule   Mark Abraham
      • [gmx-users] Equilibrate the water around my molecule   Lara Bunte
      • [gmx-users] Equilibrate the water around my molecule   Mark Abraham
      • [gmx-users] Equilibrate the water around my molecule   Lara Bunte
      • [gmx-users] Equilibrate the water around my molecule   Justin A. Lemkul
• [gmx-users] CHARMM27 topology for DOPC   Krzysztof Kuczera
  • [gmx-users] CHARMM27 topology for DOPC   Peter C. Lai
• [gmx-users] Do checkpoint files contain energies?   Andrew DeYoung
  • [gmx-users] Do checkpoint files contain energies?   Justin A. Lemkul
• [gmx-users] Fatal error: Atom CG is used in the topology database...   Andy Somogyi
  • [gmx-users] Fatal error: Atom CG is used in the topology database...   Justin A. Lemkul
    • [gmx-users] Fatal error: Atom CG is used in the topology database...   Peter C. Lai
    • [gmx-users] Fatal error: Atom CG is used in the topology database...   Andy Somogyi
      • [gmx-users] Fatal error: Atom CG is used in the topology database...   Justin A. Lemkul
• [gmx-users] renumber charge group   ahmet yıldırım
  • [gmx-users] renumber charge group   Justin A. Lemkul
• [gmx-users] Problem in running Equilibration step   Spring buds
  • [gmx-users] Problem in running Equilibration step   Mark Abraham
• [gmx-users] the RMSD of Bond lengths, Bond angles, Dihedrals and Impropers   ahmet yıldırım
  • [gmx-users] the RMSD of Bond lengths, Bond angles, Dihedrals and Impropers   Mark Abraham
    • [gmx-users] RMSD analysis during production MD   Acoot Brett
      • [gmx-users] RMSD analysis during production MD   Justin A. Lemkul
• [gmx-users] About center of mass removal   rama david
  • [gmx-users] About center of mass removal   Mark Abraham
    • [gmx-users] About center of mass removal   rama david
      • [gmx-users] About center of mass removal   Justin A. Lemkul
• [gmx-users] How to automate genion completely?   John Ladasky
  • [gmx-users] How to automate genion completely?   Justin A. Lemkul
  • [gmx-users] How to automate genion completely?   Mark Abraham
• [gmx-users] Adjust time intervals   afsaneh maleki
  • [gmx-users] Adjust time intervals   Peter C. Lai
    • [gmx-users] Adjust time intervals   Justin A. Lemkul
      • [gmx-users] Adjust time intervals   afsaneh maleki
      • [gmx-users] Adjust time intervals   Justin A. Lemkul
      • [gmx-users] Adjust time intervals   afsaneh maleki
      • [gmx-users] Adjust time intervals   Justin A. Lemkul
• [gmx-users] Dimethyl Sulfoxide EM Absorbance   Nancy
• [gmx-users] grompp is adding a bond in my model that should not be there   Jackson Chief
  • [gmx-users] grompp is adding a bond in my model that should not be there   Mark Abraham
    • [gmx-users] grompp is adding a bond in my model that should not be there   Jackson Chief
      • [gmx-users] grompp is adding a bond in my model that should not be there   Mark Abraham
    • [gmx-users] grompp is adding a bond in my model that should not be there   Tsjerk Wassenaar
• [gmx-users] error in oscillation period   mohan maruthi sena
  • [gmx-users] error in oscillation period   Mark Abraham
• [gmx-users] Exploding Protein with 4.6 and 4.5.5   SebastianWaltz
  • [gmx-users] Exploding Protein with 4.6 and 4.5.5   XAvier Periole
• [gmx-users] How to add dihedral information from the GAFF topology   bipin singh
  • [gmx-users] Re: How to add dihedral information from the GAFF topology   David van der Spoel
    • [gmx-users] Re: How to add dihedral information from the GAFF topology   bipin singh
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   bipin singh
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   bipin singh
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
      • [gmx-users] Re: WHAM question   lloyd riggs
      • [gmx-users] Re: WHAM2   lloyd riggs
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   bipin singh
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Biswajit Gorai
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   bipin singh
      • [gmx-users] on MD at constant pH   Acoot Brett
      • [gmx-users] calculation Tm of the protein by GROMACS   Acoot Brett
      • [gmx-users] on MD at constant pH   Justin A. Lemkul
      • [gmx-users] on MD at constant pH   Mark Abraham
      • [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
• [gmx-users] temperature   Roy Roshko
  • [gmx-users] temperature   Mark Abraham
• [gmx-users] Umbrella sampling along Radius of gyration   Sanku M
• [gmx-users] Problem: pdb2gmx with a more complex system   Jernej Zidar
  • [gmx-users] Problem: pdb2gmx with a more complex system   Justin A. Lemkul
    • [gmx-users] Problem: pdb2gmx with a more complex system   Mark Abraham
  • [gmx-users] Problem: pdb2gmx with a more complex system   Mark Abraham
• [gmx-users] Re: Problem: pdb2gmx with a more complex system   Jernej Zidar
• [gmx-users] dssp error   Albert
  • [gmx-users] dssp error   rarora at ens-cachan.fr
  • [gmx-users] dssp error   Erik Marklund
  • [gmx-users] dssp error   Mark Abraham
• [gmx-users] amber99sb_virtual site lipids dopc MCH3_N constraint types   Song Ke
  • [gmx-users] amber99sb_virtual site lipids dopc MCH3_N constraint types   Erik Marklund
  • [gmx-users] amber99sb_virtual site lipids dopc MCH3_N constraint types   Mark Abraham
• [gmx-users] Calculating the electrostatic potential at a point over time   Andrew DeYoung
  • [gmx-users] Calculating the electrostatic potential at a point over time   Mark Abraham
• [gmx-users] Segmentation Fault using g_cluster   Davide Mercadante
  • [gmx-users] Segmentation Fault using g_cluster   Mark Abraham
    • [gmx-users] Segmentation Fault using g_cluster   Davide Mercadante
      • [gmx-users] Segmentation Fault using g_cluster   Mark Abraham
• [gmx-users] Position restraints problem   Jernej Zidar
  • [gmx-users] Position restraints problem   Mark Abraham
• [gmx-users] Re: gmx-users Digest, Vol 95, Issue 175   Song Ke
• [gmx-users] Where would I find the 45A4 GROMOS force field?   Marc Gordon
  • [gmx-users] Where would I find the 45A4 GROMOS force field?   Justin A. Lemkul
    • [gmx-users] a question related to REMD   Acoot Brett
      • [gmx-users] a question related to REMD   Justin A. Lemkul
    • [gmx-users] on the force field   Acoot Brett
      • [gmx-users] on the force field   David van der Spoel
    • [gmx-users] Where would I find the 45A4 GROMOS force field?   Marc Gordon
      • [gmx-users] Where would I find the 45A4 GROMOS force field?   Justin A. Lemkul
      • [gmx-users] Where would I find the 45A4 GROMOS force field?   Marc Gordon
      • [gmx-users] Where would I find the 45A4 GROMOS force field?   Oliver Stueker
• [gmx-users] Position restraints problem   Jernej Zidar
  • [gmx-users] Position restraints problem   Mark Abraham
• [gmx-users] Principal Components Analysis in Gromacs   James Starlight
  • [gmx-users] Principal Components Analysis in Gromacs   Tsjerk Wassenaar
    • [gmx-users] Principal Components Analysis in Gromacs   Thomas Evangelidis
      • [gmx-users] Principal Components Analysis in Gromacs   Tsjerk Wassenaar
      • [gmx-users] Principal Components Analysis in Gromacs   James Starlight
• [gmx-users] Re: on MD at constant pH (Acoot Brett)   Gerrit Groenhof
• [gmx-users] Re: How to add dihedral information from the GAFF topology   Justin A. Lemkul
  • [gmx-users] Re: How to add dihedral information from the GAFF topology   bipin singh
• [gmx-users] Position restraints problem   Jernej Zidar
  • [gmx-users] Position restraints problem   Tsjerk Wassenaar
• [gmx-users] construction of homopolymer from non-standard monomers in gromacs   Иимяа Фаамиилиияа
  • [gmx-users] construction of homopolymer from non-standard monomers in gromacs   Justin A. Lemkul
• [gmx-users] 200 CPU, 3ns/day for 80,000 atoms !!!!   Albert
  • [gmx-users] 200 CPU, 3ns/day for 80,000 atoms !!!!   Justin A. Lemkul
  • [gmx-users] 200 CPU, 3ns/day for 80,000 atoms !!!!   Tsjerk Wassenaar
  • [gmx-users] 200 CPU, 3ns/day for 80,000 atoms !!!!   Hannes Loeffler
• [gmx-users] x,y and z components of rmsf?   patrick wintrode
  • [gmx-users] x,y and z components of rmsf?   Erik Marklund
    • [gmx-users] x,y and z components of rmsf?   Asaf Farhi
      • [gmx-users] crazy temperatures   Mark Abraham
      • [gmx-users] crazy temperatures   Warren Gallin
      • [gmx-users] x,y and z components of rmsf?   Tsjerk Wassenaar
  • [gmx-users] x,y and z components of rmsf?   Tsjerk Wassenaar
• [gmx-users] Re:200 CPU, 3ns/day for 80,000 atoms   Dr. Vitaly V. Chaban
  • [gmx-users] Re:200 CPU, 3ns/day for 80,000 atoms   Mark Abraham
• [gmx-users] Calculate Bulk Pressure Tensor?   Weilong Zhao
  • [gmx-users] Calculate Bulk Pressure Tensor?   Erik Marklund
• [gmx-users] Re: crazy temperatures   Dr. Vitaly V. Chaban
  • [gmx-users] Re: crazy temperatures   Tsjerk Wassenaar
• [gmx-users] crazy temperatures   chris.neale at utoronto.ca
• [gmx-users] About movie in GROMACS   rama david
  • [gmx-users] non-equilibrium MD   Acoot Brett
  • AW: [gmx-users] About movie in GROMACS   Rausch, Felix
    • AW: [gmx-users] About movie in GROMACS   lloyd riggs
  • [gmx-users] About movie in GROMACS   Mark Abraham
• [gmx-users] Shima Arasteh wants to share a link | Gromacs   rossen at kth.se
  • [gmx-users] Shima Arasteh wants to share a link | Gromacs   Emanuel Birru
  • [gmx-users] Shima Arasteh wants to share a link | Gromacs   Mark Abraham
  • [gmx-users] Shima Arasteh wants to share a link | Gromacs   rama david
    • [gmx-users] Shima Arasteh wants to share a link | Gromacs   Shima Arasteh
• [gmx-users] Pressure coupling doubt   bipin singh
  • [gmx-users] Pressure coupling doubt   Mark Abraham
• [gmx-users] about g_mindist....   rama david
  • [gmx-users] about g_mindist....   Mark Abraham
    • [gmx-users] about g_mindist....   rama david
      • [gmx-users] about g_mindist....   Mark Abraham
• [gmx-users] mpirun   cuong nguyen
  • [gmx-users] mpirun   TH Chew
  • [gmx-users] mpirun   Mark Abraham
• [gmx-users] Not able to continue with Equilibration   Hendry
  • AW: [gmx-users] Not able to continue with Equilibration   Rausch, Felix
    • [gmx-users] Not able to continue with Equilibration   Hendry
  • [gmx-users] Not able to continue with Equilibration   Mark Abraham
    • [gmx-users] Not able to continue with Equilibration   francesca vitalini
      • AW: [gmx-users] Not able to continue with Equilibration   Rausch, Felix
      • [gmx-users] Not able to continue with Equilibration   francesca vitalini
      • [gmx-users] Not able to continue with Equilibration   Justin A. Lemkul
• [gmx-users] deformations aplying an electric field   Rebeca García Fandiño
• [gmx-users] About cutt-off scheme ..   rama david
  • [gmx-users] About cutt-off scheme ..   Justin A. Lemkul
    • [gmx-users] About cutt-off scheme ..   rama david
      • [gmx-users] About cutt-off scheme ..   Justin A. Lemkul
      • [gmx-users] About cutt-off scheme ..   rama david
      • [gmx-users] About cutt-off scheme ..   Justin A. Lemkul
• [gmx-users] How to fix Water during simulation ?   ajani haresh
  • [gmx-users] How to fix Water during simulation ?   Justin A. Lemkul
• [gmx-users] Umbrella sampling along Radius of gyration   chris.neale at utoronto.ca
  • [gmx-users] Umbrella sampling along Radius of gyration   felmerino at uchile.cl
• [gmx-users] Not able to continue with Equilibration   chris.neale at utoronto.ca
  • [gmx-users] Not able to continue with Equilibration   francesca vitalini
    • [gmx-users] Not able to continue with Equilibration   Justin A. Lemkul
      • [gmx-users] Not able to continue with Equilibration   francesca vitalini
      • [gmx-users] Not able to continue with Equilibration   Mark Abraham
      • [gmx-users] Not able to continue with Equilibration   francesca vitalini
      • [gmx-users] Not able to continue with Equilibration   Justin A. Lemkul
• [gmx-users] Velocity autocorrelation   Ignacio Fernández Galván
  • [gmx-users] Velocity autocorrelation   Mark Abraham
  • [gmx-users] Velocity autocorrelation   Krzysztof Kuczera
    • [gmx-users] Can GROMACS read binpos trajectory files?   a a
      • [gmx-users] How to read in mdcrd files to gromacs?   a a
      • [gmx-users] How to read in mdcrd files to gromacs?   Broadbent, Richard
      • [gmx-users] About the function of "-v' in mdrun   Acoot Brett
      • [gmx-users] About the function of "-v' in mdrun   Dallas Warren
      • [gmx-users] protein melting experiment by GROMACS   Acoot Brett
      • [gmx-users] protein melting experiment by GROMACS   Mark Abraham
      • [gmx-users] protein melting experiment by GROMACS   Justin A. Lemkul
      • [gmx-users] g_energy   Payman Pirzadeh
      • [gmx-users] g_energy surf*surftens   Payman Pirzadeh
      • [gmx-users] g_energy surf*surftens   David van der Spoel
      • [gmx-users] About the function of "-v' in mdrun   Peter C. Lai
      • [gmx-users] About the function of "-v' in mdrun   Szilárd Páll
    • [gmx-users] Velocity autocorrelation   Ignacio Fernández Galván
      • [gmx-users] Velocity autocorrelation   David van der Spoel
      • [gmx-users] Velocity autocorrelation   Ignacio Fernández Galván
      • [gmx-users] Velocity autocorrelation   David van der Spoel
      • [gmx-users] Velocity autocorrelation   Ignacio Fernández Galván
      • [gmx-users] Velocity autocorrelation   David van der Spoel
• [gmx-users] About Distance.pl script   vidhya sankar
  • [gmx-users] About Distance.pl script   Justin A. Lemkul
  • [gmx-users] About Distance.pl script   Dariush Mohammadyani
    • [gmx-users] About Distance.pl script   Justin A. Lemkul
• [gmx-users] HB lifetime   Nidhi Katyal
  • [gmx-users] HB lifetime   Erik Marklund
    • [gmx-users] HB lifetime   Nidhi Katyal
      • [gmx-users] HB lifetime   Erik Marklund
      • [gmx-users] HB lifetime   Nidhi Katyal
      • [gmx-users] HB lifetime   Justin A. Lemkul
• [gmx-users] Pressure coupling and Isothermal compressibility for a biphasic system   bipin singh
• [gmx-users] About desired Spacing in Distance.pl script   vidhya sankar
  • [gmx-users] About desired Spacing in Distance.pl script   Justin A. Lemkul
• [gmx-users] how to optimize hydrogen bonds before simulation?   Albert
  • [gmx-users] how to optimize hydrogen bonds before simulation?   Justin A. Lemkul
• [gmx-users] System exploding   Lara Bunte
  • [gmx-users] System exploding   Justin A. Lemkul
• [gmx-users] Re: how to optimize hydrogen bonds before simulation?   Dr. Vitaly V. Chaban
• [gmx-users] Editing of the existing system   James Starlight
  • [gmx-users] Editing of the existing system   Mark Abraham
    • [gmx-users] Editing of the existing system   James Starlight
      • [gmx-users] Editing of the existing system   Mark Abraham
      • [gmx-users] Editing of the existing system   James Starlight
      • [gmx-users] Editing of the existing system   Justin A. Lemkul
      • [gmx-users] Editing of the existing system   James Starlight
      • [gmx-users] Editing of the existing system   Justin A. Lemkul
      • [gmx-users] Editing of the existing system   James Starlight
      • [gmx-users] Editing of the existing system   Justin A. Lemkul
      • [gmx-users] Editing of the existing system   James Starlight
• [gmx-users] Re: do_dssp error   Albert
  • [gmx-users] Re: do_dssp error   Erik Marklund
    • [gmx-users] Re: do_dssp error   Mark Abraham
• [gmx-users] Re: gmx-users Digest, Vol 95, Issue 208   Albert
• [gmx-users] Re: gmx-users Digest, Vol 95, Issue 208   Albert
  • [gmx-users] Re: gmx-users Digest, Vol 95, Issue 208   Erik Marklund
• [gmx-users] About Umbrella spacing   vidhya sankar
  • [gmx-users] About Umbrella spacing   Justin A. Lemkul
• [gmx-users] Fwd: About g_energy analysis   rama david
• [gmx-users] DNA podophyllotoxin   Hovakim Grabski
  • [gmx-users] DNA podophyllotoxin   Justin A. Lemkul
  • [gmx-users] DNA podophyllotoxin   Paulo Netz
• [gmx-users] large scale simulation?   Albert
  • [gmx-users] large scale simulation?   David van der Spoel
    • [gmx-users] large scale simulation?   Peter C. Lai
      • [gmx-users] large scale simulation?   Mark Abraham
  • [gmx-users] large scale simulation?   Oliver Stueker
  • [gmx-users] large scale simulation?   Szilárd Páll
    • [gmx-users] How to set the VMD_PLUGIN_PATH for gromacs analysis?   a a
• [gmx-users] index.ndx files   Eduardo Oliveira
  • [gmx-users] index.ndx files   Mark Abraham
    • [gmx-users] index.ndx files   Eduardo Oliveira
      • [gmx-users] index.ndx files   Peter C. Lai
      • [gmx-users] index.ndx files   Eduardo Oliveira
  • [gmx-users] index.ndx files   Justin A. Lemkul
• [gmx-users] Re: large scale simulation?   Albert
  • [gmx-users] Re: large scale simulation?   Mark Abraham
    • [gmx-users] Re: large scale simulation?   Dommert Florian
      • [gmx-users] Re: large scale simulation?   Dommert Florian
• [gmx-users] Regarding to relaxation time   rama david
  • [gmx-users] Regarding to relaxation time   Justin A. Lemkul
    • [gmx-users] Re: hkl harker sections   lloyd riggs
• [gmx-users] help needed   oindrila das
  • [gmx-users] help needed   Mark Abraham
• [gmx-users] Re: large scale simulations   Dr. Vitaly V. Chaban
  • [gmx-users] Re: large scale simulations   David van der Spoel
• [gmx-users] Scale down/ up velocities when coupling temperature and pressure?   Yun Shi
  • [gmx-users] Scale down/ up velocities when coupling temperature and pressure?   Erik Marklund
• [gmx-users] genion   Eduardo Oliveira
  • [gmx-users] genion   Justin A. Lemkul
• [gmx-users] Re: hkl harker sections   Dr. Vitaly V. Chaban
• [gmx-users] genion   Justin A. Lemkul
• [gmx-users] g_tune_pme error in blue gene   Albert

Last message date: Sat Mar 31 21:16:29 CEST 2012
Archived on: Thu Nov 14 12:12:32 CET 2013

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