February 2016 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Mon Feb 1 05:00:02 CET 2016
Ending: Mon Feb 29 22:53:20 CET 2016
Messages: 717

• [gmx-users] g_count   vgsplayer1
  • [gmx-users] g_count   Mark Abraham
• [gmx-users] gmx bundle   Felix W.-H. Weng
  • [gmx-users] gmx bundle   Mark Abraham
    • [gmx-users] gmx bundle   m.monsefi93
• [gmx-users] weird configuration when pulling rate is small   Ming Tang
  • [gmx-users] weird configuration when pulling rate is small   Tsjerk Wassenaar
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 1   Mehreen Jan
• [gmx-users] gromacs error   Mehreen Jan
  • [gmx-users] gromacs error   Justin Lemkul
• [gmx-users] Low GPU utilization   Hovakim Grabski
  • [gmx-users] Low GPU utilization   Mark Abraham
• [gmx-users] weird configuration when pulling rate is small   Ming Tang
• [gmx-users] g_count   vgsplayer1
  • [gmx-users] g_count   Mark Abraham
• [gmx-users] what means of contact in mindist?   masoud keramati
  • [gmx-users] what means of contact in mindist?   Tsjerk Wassenaar
    • [gmx-users] what means of contact in mindist?   masoud keramati
      • [gmx-users] what means of contact in mindist?   Mark Abraham
      • [gmx-users] what means of contact in mindist?   masoud keramati
      • [gmx-users] what means of contact in mindist?   范聪
      • [gmx-users] what means of contact in mindist?   范聪
• [gmx-users] Nstlist and constrain simulations   Michail Palaiokostas Avramidis
  • [gmx-users] Nstlist and constrain simulations   Mark Abraham
    • [gmx-users] Nstlist and constrain simulations   Michail Palaiokostas Avramidis
      • [gmx-users] Nstlist and constrain simulations   Szilárd Páll
      • [gmx-users] Nstlist and constrain simulations   Michail Palaiokostas Avramidis
      • [gmx-users] Nstlist and constrain simulations   Szilárd Páll
      • [gmx-users] Nstlist and constrain simulations   Michail Palaiokostas Avramidis
      • [gmx-users] Nstlist and constrain simulations   Mark Abraham
      • [gmx-users] Nstlist and constrain simulations   Szilárd Páll
      • [gmx-users] Nstlist and constrain simulations   Mark Abraham
• [gmx-users] Fw: question   Mass
  • [gmx-users] Fw: question   André Farias de Moura
• [gmx-users] Fw: question:Justin toturial   Mass
  • [gmx-users] Fw: question:Justin toturial   André Farias de Moura
    • [gmx-users] Fw: question:Justin toturial   Mass
• [gmx-users] AMBER nonbond params in GROMACS   Patrick Charchar
  • [gmx-users] AMBER nonbond params in GROMACS   Mark Abraham
    • [gmx-users] AMBER nonbond params in GROMACS   Patrick Charchar
• [gmx-users] Fw: question:Justin toturial (Mass)   Groenhof, Gerrit
• [gmx-users] US perl scripts gives empty   Nikhil Maroli
  • [gmx-users] US perl scripts gives empty   Justin Lemkul
• [gmx-users] Molecular dynamics with methyl groups instead of peptide bonds.   Dawid das
  • [gmx-users] Molecular dynamics with methyl groups instead of peptide bonds.   Mark Abraham
    • [gmx-users] Molecular dynamics with methyl groups instead of peptide bonds.   Dawid das
• [gmx-users] Verlet scheme and relative free binding energy   Dries Van Rompaey
  • [gmx-users] Verlet scheme and relative free binding energy   Mark Abraham
• [gmx-users] atom name 1 in topol.top and conf.gro does not match   Chang Woon Jang
• [gmx-users] Modified peptides   sun
  • [gmx-users] Modified peptides   Justin Lemkul
• [gmx-users] dna topology in OPLS force field   soumadwip ghosh
  • [gmx-users] dna topology in OPLS force field   Justin Lemkul
• [gmx-users] trjconv - two chains are separated   Yunlong Liu
  • [gmx-users] trjconv - two chains are separated   Trayder Thomas
    • [gmx-users] trjconv - two chains are separated   Catarina A. Carvalheda dos Santos
      • [gmx-users] trjconv - two chains are separated   Peter Stern
• [gmx-users] Rarefied trajectory   Timofey Tyugashev
  • [gmx-users] Rarefied trajectory   Tsjerk Wassenaar
• [gmx-users] gromos43a1p-4.5.1.tgz can alos used for TPO and SEP   Mehreen Jan
  • [gmx-users] gromos43a1p-4.5.1.tgz can alos used for TPO and SEP   Justin Lemkul
• [gmx-users] How the topology file is created based on *.gro file?   Dawid das
  • [gmx-users] How the topology file is created based on *.gro file?   Mark Abraham
    • [gmx-users] How the topology file is created based on *.gro file?   Dawid das
      • [gmx-users] How the topology file is created based on *.gro file?   Diogo Vila Viçosa
      • [gmx-users] How the topology file is created based on *.gro file?   Dawid das
      • [gmx-users] How the topology file is created based on *.gro file?   Mark Abraham
• [gmx-users] Laptop features for MD simulations - recommendations   Yasser Almeida Hernández
  • [gmx-users] Laptop features for MD simulations - recommendations   João Henriques
• [gmx-users] Thermal energy   gozde ergin
• [gmx-users] Laptop features for MD simulations - recommendations   Yasser Almeida Hernández
  • [gmx-users] Laptop features for MD simulations - recommendations   Dries Van Rompaey
  • [gmx-users] Laptop features for MD simulations - recommendations   Szilárd Páll
    • [gmx-users] Laptop features for MD simulations - recommendations   Dries Van Rompaey
      • [gmx-users] Laptop features for MD simulations - recommendations   Szilárd Páll
      • [gmx-users] Laptop features for MD simulations - recommendations   Davide Cruz
• [gmx-users] How to visualizing gro file in pymol   anu chandra
  • [gmx-users] How to visualizing gro file in pymol   Diogo Vila Viçosa
  • [gmx-users] How to visualizing gro file in pymol   Dries Van Rompaey
  • [gmx-users] How to visualizing gro file in pymol   Catarina A. Carvalheda dos Santos
    • [gmx-users] How to visualizing gro file in pymol   Francesco Carbone
• [gmx-users] Laptop features for MD simulations - recommendations   Yasser Almeida Hernández
  • [gmx-users] Laptop features for MD simulations - recommendations   João Henriques
    • [gmx-users] Laptop features for MD simulations - recommendations   Mark Abraham
• [gmx-users] trjconv options?   Timofey Tyugashev
  • [gmx-users] trjconv options?   Justin Lemkul
• [gmx-users] GROMACS 5.1.2 official release   Mark Abraham
• [gmx-users] Free energy calculations with tabulated potentials   POTTER T.D.
• [gmx-users] CNT using g_x2top   soumadwip ghosh
  • [gmx-users] CNT using g_x2top   Mark Abraham
• [gmx-users] C_v and Temperature   Alexander Alexander
  • [gmx-users] C_v and Temperature   David van der Spoel
    • [gmx-users] C_v and Temperature   Alexander Alexander
      • [gmx-users] Fwd: C_v and Temperature   Alexander Alexander
• [gmx-users] Fwd: FW: PME settings in free energy calculations   Michael Shirts
  • [gmx-users] Fwd: FW: PME settings in free energy calculations   Dries Van Rompaey
    • [gmx-users] Fwd: FW: PME settings in free energy calculations   Michael Shirts
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Michael Shirts
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Dries Van Rompaey
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Mark Abraham
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Dries Van Rompaey
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Mark Abraham
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Dries Van Rompaey
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Mark Abraham
      • [gmx-users] Fwd: FW: PME settings in free energy calculations   Dries Van Rompaey
• [gmx-users] trjconv options?   Timofey Tyugashev
  • [gmx-users] trjconv options?   Justin Lemkul
• [gmx-users] Wall potential different results for 12-6 and table   Sudharsan Pandiyan
• [gmx-users] $GMXLIB or the working directory   Justin Lemkul
• [gmx-users] xpm matrix value   Lábas Anikó
  • [gmx-users] xpm matrix value   Lábas Anikó
• [gmx-users] sep and tpo   Mehreen Jan
  • [gmx-users] sep and tpo   Justin Lemkul
• [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames   sun
  • [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames   Justin Lemkul
  • [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames   Nikhil Maroli
    • [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames   Mark Abraham
      • [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames   sun
      • [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames   sun
• [gmx-users] Polymer structure preparation   Lei Zhao
• [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames (sun)   Björn Sommer
  • [gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames (sun)   Sun Iba
• [gmx-users] sigma and epsilon values for C and H atoms in CNT   Sanchaita Rajkhowa
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 24   Timofey Tyugashev
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 24   Mark Abraham
• [gmx-users] Water removed from system and visualizing protein alone   Björn Sommer
• [gmx-users] ff99SB-ILDN and .mdp parameters   Timofey Tyugashev
• [gmx-users] sigma and epsilon values for C and H atoms in CNT   soumadwip ghosh
• [gmx-users] Laptop features for MD simulations - recommendations   Björn Sommer
• [gmx-users] <tutorial> lipid pressure flucuations   xy21hb
  • [gmx-users] <tutorial> lipid pressure flucuations   Justin Lemkul
• [gmx-users] strange behaviout in 5.1.2   Kortzak, Daniel
  • [gmx-users] strange behaviout in 5.1.2   Justin Lemkul
    • [gmx-users] strange behaviout in 5.1.2   Mark Abraham
      • [gmx-users] strange behaviout in 5.1.2   Justin Lemkul
      • [gmx-users] strange behaviout in 5.1.2   Mark Abraham
      • [gmx-users] strange behaviout in 5.1.2   Mark Abraham
      • [gmx-users] strange behaviout in 5.1.2   Erik Marklund
      • [gmx-users] strange behaviout in 5.1.2   Erik Marklund
      • [gmx-users] strange behaviout in 5.1.2   Mark Abraham
• [gmx-users] Segmentation fault (core dumped) after grompp minimization   Poncho Arvayo Zatarain
  • [gmx-users] Segmentation fault (core dumped) after grompp minimization   Justin Lemkul
• [gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial   Alexander Alexander
  • [gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial   Justin Lemkul
    • [gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial   Alexander Alexander
      • [gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial   Justin Lemkul
• [gmx-users] Sampling snapshots in arbitrary intervals of time   Irem Altan
  • [gmx-users] Sampling snapshots in arbitrary intervals of time   Mark Abraham
• [gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future?   Nikhil Maroli
  • [gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future?   Szilárd Páll
    • [gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future?   Nikhil Maroli
      • [gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future?   Justin Lemkul
• [gmx-users] Removing relative motion of water   Felix W.-H. Weng
• [gmx-users] fixing PBC view   Netaly Khazanov
  • [gmx-users] fixing PBC view   Justin Lemkul
    • [gmx-users] fixing PBC view   Netaly Khazanov
• [gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x   Johannes Wagner
  • [gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x   Kutzner, Carsten
  • [gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x   Mark Abraham
• [gmx-users] fatal error.Atomtype LC3 not found.   Waqas khan
  • [gmx-users] fatal error.Atomtype LC3 not found.   Justin Lemkul
• [gmx-users] unusual bonds   Sudip Das
  • [gmx-users] unusual bonds   Mark Abraham
    • [gmx-users] unusual bonds   Sudip Das
• [gmx-users] fatal error.Atomtype LC3 not found.   Nikhil Maroli
• [gmx-users] Equilibration error   Abid Channa
  • [gmx-users] Equilibration error   Justin Lemkul
• [gmx-users] Unknown left-hand 'pull-geometry' in parameter file   Alexander Alexander
  • [gmx-users] Unknown left-hand 'pull-geometry' in parameter file   Mark Abraham
• [gmx-users] topology and coordinate file not matching after grompp   Swagata Patra
  • [gmx-users] topology and coordinate file not matching after grompp   Sotirios Dionysios I. Papadatos
• [gmx-users] creating representative structures   Shyno Mathew
  • [gmx-users] creating representative structures   Mark Abraham
  • [gmx-users] creating representative structures   Téletchéa Stéphane
  • [gmx-users] creating representative structures   Shyno Mathew
• [gmx-users] topology and coordinate file not matching after grompp   Swagata Patra
  • [gmx-users] topology and coordinate file not matching after grompp   SAPNA BORAH
    • [gmx-users] topology and coordinate file not matching after grompp   Swagata Patra
      • [gmx-users] topology and coordinate file not matching after grompp   Tsjerk Wassenaar
• [gmx-users] DMF molecule   mohammad r
  • [gmx-users] DMF molecule   David van der Spoel
• [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   SAPNA BORAH
  • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   Mark Abraham
    • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   SAPNA BORAH
      • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   Tsjerk Wassenaar
      • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   SAPNA BORAH
      • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   Dries Van Rompaey
      • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   SAPNA BORAH
      • [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 42   Mehreen Jan
• [gmx-users] Fw: wrong number of control atomes in hdb   Mehreen Jan
• [gmx-users] wrong number of control atoms (2 iso 3) on line: 2 3 N -C -CA   Mehreen Jan
  • [gmx-users] wrong number of control atoms (2 iso 3) on line: 2 3 N -C -CA   Justin Lemkul
• [gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x   Johannes Wagner
• [gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x   Johannes Wagner
• [gmx-users] Getting and keeping ACPYPE updated   Alan
• [gmx-users] complex topology file   Sana Saeed
  • [gmx-users] complex topology file   Justin Lemkul
  • [gmx-users] complex topology file   Sana Saeed
    • [gmx-users] complex topology file   Justin Lemkul
• [gmx-users] Fw: add parameter   Mahnaz Mirsoltani
• [gmx-users] add parameter   Mahnaz Mirsoltani
  • [gmx-users] add parameter   Justin Lemkul
• [gmx-users] difference between gmx energy and gmx traj   Ray Chao
  • [gmx-users] difference between gmx energy and gmx traj   Justin Lemkul
• [gmx-users] what is control atoms???   Mehreen Jan
• [gmx-users] Gromacs installation FTP issue   Ragothaman Yennamalli
  • [gmx-users] Gromacs installation FTP issue   Ragothaman Yennamalli
  • [gmx-users] Gromacs installation FTP issue   Mark Abraham
• [gmx-users] μVT simulations and genbox   Irem Altan
  • [gmx-users] μVT simulations and genbox   Michael Shirts
• [gmx-users] improper dihedral convention   Parvez Mh
  • [gmx-users] improper dihedral convention   Mark Abraham
• [gmx-users] Reading multiple trajectories for Gromacs analysis   anu chandra
  • [gmx-users] Reading multiple trajectories for Gromacs analysis   Ganesh Shahane
• [gmx-users] Weird configuration when pulling rate is small   Ming Tang
  • [gmx-users] Weird configuration when pulling rate is small   Erik Marklund
• [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   Mahboobe Sadr
  • [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   Mark Abraham
    • [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   M S
      • [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   Mark Abraham
      • [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   M S
      • [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   Justin Lemkul
      • [gmx-users] difference in rvdw , rlist parameters in em and nvt steps   M S
• [gmx-users] complex topology file   Justin Lemkul
• [gmx-users] View Trajectory - Water Expansion   Natalie Stephenson
  • [gmx-users] View Trajectory - Water Expansion   Justin Lemkul
• [gmx-users] Choosing Parameter values of PTMs   David Newman
  • [gmx-users] Choosing Parameter values of PTMs   bipin singh
  • [gmx-users] Choosing Parameter values of PTMs   Krzysztof Kuczera
• [gmx-users] add parameter   Malihe Hasanzadeh
  • [gmx-users] add parameter   Justin Lemkul
    • [gmx-users] add parameter   Malihe Hasanzadeh
      • [gmx-users] add parameter   Justin Lemkul
• [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
  • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Smith, Micholas D.
    • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Mark Abraham
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Mark Abraham
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Mark Abraham
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Mark Abraham
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Mark Abraham
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Mark Abraham
      • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
    • [gmx-users] gromacs-5.1.1 installation error: libxml2 problem   Irina Kosheleva
• [gmx-users] CTP .gro and .itp file   Mohsen Ramezanpour
• [gmx-users] Choosing Parameter values of PTMs   Laercio Pol Fachin
• [gmx-users] Weird configuration when pulling rate is small   Ming Tang
  • [gmx-users] Weird configuration when pulling rate is small   Erik Marklund
• [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Hardy, Adam
  • [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Mark Abraham
    • [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Hardy, Adam
      • [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Mark Abraham
      • [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Hardy, Adam
  • [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Irina Kosheleva
    • [gmx-users] ADD_LIBRARY cmake error on Bluegene/Q   Hardy, Adam
• [gmx-users] correct rlist and Verlet scheme   Timofey Tyugashev
  • [gmx-users] correct rlist and Verlet scheme   Hardy, Adam
    • [gmx-users] correct rlist and Verlet scheme   Mark Abraham
• [gmx-users] F4-Order-parameter   sujithkakkat .
• [gmx-users] PMF of a single water molecule respect to a surface   Alexander Alexander
  • [gmx-users] PMF of a single water molecule respect to a surface   Justin Lemkul
• [gmx-users] Installation problem   Prof. Eddie
  • [gmx-users] Installation problem   Nikhil Maroli
    • [gmx-users] Installation problem   Prof. Eddie
      • [gmx-users] Installation problem   Mark Abraham
      • [gmx-users] Installation problem   Nikhil Maroli
• [gmx-users] DSSP secondary structure   mohammad r
  • [gmx-users] DSSP secondary structure   Justin Lemkul
    • [gmx-users] DSSP secondary structure   mohammad r
      • [gmx-users] DSSP secondary structure   Justin Lemkul
      • [gmx-users] DSSP secondary structure   mohammad r
      • [gmx-users] DSSP secondary structure   Justin Lemkul
      • [gmx-users] DSSP secondary structure   mohammad r
      • [gmx-users] DSSP secondary structure   Justin Lemkul
• [gmx-users] Prodrg disturbed hybridization state of doubly bonded nitrogen   Saman Yousuf ali
  • [gmx-users] Prodrg disturbed hybridization state of doubly bonded nitrogen   David van der Spoel
• [gmx-users] Optimum slice size (-sl)   Ashutosh Akshay Shah
  • [gmx-users] Optimum slice size (-sl)   André Farias de Moura
    • [gmx-users] Optimum slice size (-sl)   Warren Gallin
      • [gmx-users] Optimum slice size (-sl)   Ashutosh Akshay Shah
      • [gmx-users] Optimum slice size (-sl)   Ashutosh Akshay Shah
• [gmx-users] pulling simulation   Mehrnoosh Hazrati
  • [gmx-users] pulling simulation   Justin Lemkul
• [gmx-users] energygrps   Alexander Alexander
  • [gmx-users] energygrps   Justin Lemkul
• [gmx-users] Simulation Terminated on Clusters Due to "unable to write checkpoint file"   Ray Chao
• [gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file"   Ray Chao
  • [gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file"   Mark Abraham
• [gmx-users] pulling simulation   Mehrnoosh Hazrati
• [gmx-users] Porting to Gromacs of Parmbsc1   Sarath Chandra
  • [gmx-users] Porting to Gromacs of Parmbsc1   Mark Abraham
    • [gmx-users] Porting to Gromacs of Parmbsc1   Sarath Chandra
      • [gmx-users] Porting to Gromacs of Parmbsc1   Mark Abraham
• [gmx-users] Installation problem   Prof. Eddie
  • [gmx-users] Installation problem   Mark Abraham
• [gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file"   Ray Chao
  • [gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file"   Mark Abraham
• [gmx-users] gmx cluster   sun
• [gmx-users] fatal error trying to simulate glycosylated proteins   David Newman
  • [gmx-users] fatal error trying to simulate glycosylated proteins   Justin Lemkul
• [gmx-users] How I merge all .tpr files   Abid Channa
  • [gmx-users] How I merge all .tpr files   Justin Lemkul
• [gmx-users] genebox and solvate command   Mehreen Jan
  • [gmx-users] genebox and solvate command   Justin Lemkul
• [gmx-users] which source file is handling for writing distance restraint potential energy to edr file?   Yuno Lee
  • [gmx-users] which source file is handling for writing distance restraint potential energy to edr file?   Mark Abraham
  • [gmx-users] which source file is handling for writing distance restraint potential energy to edr file?   Yuno Lee
• [gmx-users] the helical axis of a triple helix   Ming Tang
• [gmx-users] correct rlist and Verlet scheme   Timofey Tyugashev
  • [gmx-users] correct rlist and Verlet scheme   Mark Abraham
• [gmx-users] PM3-AD ERROR GROMACS 5.1.1   Tuanan Lourenço
  • [gmx-users] PM3-AD ERROR GROMACS 5.1.1   Mark Abraham
• [gmx-users] Order parameter   sujithkakkat .
• [gmx-users] Shrink simulation box while maintaining ensemble   Matthias Ernst
  • [gmx-users] Shrink simulation box while maintaining ensemble   Justin Lemkul
    • [gmx-users] Shrink simulation box while maintaining ensemble   Tsjerk Wassenaar
• [gmx-users] NVT-Eq ---> NVT-MD   Alexander Alexander
  • [gmx-users] NVT-Eq ---> NVT-MD   Justin Lemkul
    • [gmx-users] NVT-Eq ---> NVT-MD   Alexander Alexander
      • [gmx-users] NVT-Eq ---> NVT-MD   Justin Lemkul
      • [gmx-users] NVT-Eq ---> NVT-MD   Mark Abraham
      • [gmx-users] NVT-Eq ---> NVT-MD   Alexander Alexander
      • [gmx-users] NVT-Eq ---> NVT-MD   Justin Lemkul
      • [gmx-users] NVT-Eq ---> NVT-MD   Alexander Alexander
• [gmx-users] calculate *all* carbon atom distances over time?   Athina Meletiou
  • [gmx-users] calculate *all* carbon atom distances over time?   Justin Lemkul
• [gmx-users] RMSD reproducibility   Biplab Ghosh
  • [gmx-users] RMSD reproducibility   Justin Lemkul
• [gmx-users] calculate *all* carbon atom distances over time?   Athina Meletiou
• [gmx-users] calculate *all* carbon atom distances over time?   Athina Meletiou
  • [gmx-users] calculate *all* carbon atom distances over time?   Justin Lemkul
• [gmx-users] calculate *all* carbon atom distances over time?   Athina Meletiou
  • [gmx-users] calculate *all* carbon atom distances over time?   Justin Lemkul
• [gmx-users] calculate *all* carbon atom distances over time?   Athina Meletiou
  • [gmx-users] calculate *all* carbon atom distances over time?   Mark Abraham
• [gmx-users] Adding chain ID with g_cluster outputs   anu chandra
• [gmx-users] How to generate intermediates for alchemy mutation   Jagannath Mondal
  • [gmx-users] How to generate intermediates for alchemy mutation   Mark Abraham
• [gmx-users] Not sure how to include dihedral angle params of ATP into force field   Zheng Ruan
  • [gmx-users] Not sure how to include dihedral angle params of ATP into force field   Piggot T.
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 78   Mehreen Jan
• [gmx-users] GMX_USE_RTD SCP=OFF CMAKE option   Mehreen Jan
  • [gmx-users] GMX_USE_RTD SCP=OFF CMAKE option   Erik Marklund
• [gmx-users] Problem with running Gromacs v. 5   Mehrnoosh Hazrati
  • [gmx-users] Problem with running Gromacs v. 5   Alexander Alexander
  • [gmx-users] Problem with running Gromacs v. 5   Mark Abraham
• [gmx-users] Introduction of mutation into a PDB file, how?   Seera Suryanarayana
  • [gmx-users] Introduction of mutation into a PDB file, how?   Catarina A. Carvalheda dos Santos
  • [gmx-users] Introduction of mutation into a PDB file, how?   nithyanny90 at gmail.com
• [gmx-users] Question about GROMACS   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Question about GROMACS   Mark Abraham
• [gmx-users] calculate *all* carbon atom distances over time?   Athina Meletiou
  • [gmx-users] calculate *all* carbon atom distances over time?   Justin Lemkul
• [gmx-users] Gromacs issue   khourshaeishargh at mech.sharif.ir
• [gmx-users] Gromacs issue   khourshaeishargh at mech.sharif.ir
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 76   Timofey Tyugashev
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 76   Mark Abraham
• [gmx-users] MPI and OpenMP threads   Alexander Alexander
  • [gmx-users] MPI and OpenMP threads   Szilárd Páll
    • [gmx-users] MPI and OpenMP threads   Alexander Alexander
      • [gmx-users] MPI and OpenMP threads   Szilárd Páll
• [gmx-users] error running grompp for ions.mdp input   Ghada Mhmd
  • [gmx-users] error running grompp for ions.mdp input   Smith, Micholas D.
    • [gmx-users] error running grompp for ions.mdp input   Ghada Mhmd
      • [gmx-users] error running grompp for ions.mdp input   Justin Lemkul
• [gmx-users] g_hyrorder   xy21hb
  • [gmx-users] g_hyrorder   David van der Spoel
• [gmx-users] Roadmap for new features   Nicolas Cheron
  • [gmx-users] Roadmap for new features   Mark Abraham
• [gmx-users] gmx chi output clarification   Francesco Carbone
  • [gmx-users] gmx chi output clarification   Justin Lemkul
    • [gmx-users] gmx chi output clarification   Francesco Carbone
      • [gmx-users] gmx chi output clarification   Justin Lemkul
      • [gmx-users] gmx chi output clarification   Francesco Carbone
      • [gmx-users] gmx chi output clarification   Justin Lemkul
      • [gmx-users] gmx chi output clarification   Francesco Carbone
      • [gmx-users] gmx chi output clarification   Justin Lemkul
      • [gmx-users] gmx chi output clarification   Francesco Carbone
• [gmx-users] crosslinking polypeptide chains   Nash, Anthony
  • [gmx-users] crosslinking polypeptide chains   Justin Lemkul
  • [gmx-users] crosslinking polypeptide chains   Mark Abraham
    • [gmx-users] crosslinking polypeptide chains   Nash, Anthony
      • [gmx-users] crosslinking polypeptide chains   Justin Lemkul
      • [gmx-users] crosslinking polypeptide chains   Mark Abraham
• [gmx-users] Problem with running Gromacs v. 5   Mehrnoosh Hazrati
• [gmx-users] Density as a function of time   Ashutosh Akshay Shah
  • [gmx-users] Density as a function of time   Justin Lemkul
    • [gmx-users] Density as a function of time   Ashutosh Akshay Shah
• [gmx-users] NPT equilibration with small cell   Miguel Caro
  • [gmx-users] NPT equilibration with small cell   Mark Abraham
    • [gmx-users] NPT equilibration with small cell   Caro Miguel
      • [gmx-users] NPT equilibration with small cell   Justin Lemkul
      • [gmx-users] NPT equilibration with small cell   Miguel Caro
  • [gmx-users] NPT equilibration with small cell   VITALY V. CHABAN
    • [gmx-users] NPT equilibration with small cell   André Farias de Moura
      • [gmx-users] NPT equilibration with small cell   Tsjerk Wassenaar
• [gmx-users] Using make_ndx to combine many residues into 1 group   Agnivo Gosai
  • [gmx-users] Using make_ndx to combine many residues into 1 group   Justin Lemkul
• [gmx-users] [CfP] 5th IEEE Track on Collaborative Modeling and Simulation (Comets 2016) **** Submission Deadline Extended ****   Daniele Gianni
• [gmx-users] correct rlist and Verlet scheme   Timofey Tyugashev
  • [gmx-users] correct rlist and Verlet scheme   Mark Abraham
    • [gmx-users] correct rlist and Verlet scheme   Szilárd Páll
      • [gmx-users] correct rlist and Verlet scheme   Szilárd Páll
• [gmx-users] Unknown bond_atomtype   Nash, Anthony
  • [gmx-users] Unknown bond_atomtype   Mark Abraham
    • [gmx-users] Unknown bond_atomtype   Nash, Anthony
      • [gmx-users] Unknown bond_atomtype   Nash, Anthony
      • [gmx-users] Unknown bond_atomtype   Nash, Anthony
      • [gmx-users] Unknown bond_atomtype   Mark Abraham
      • [gmx-users] Unknown bond_atomtype   Nash, Anthony
      • [gmx-users] Unknown bond_atomtype   Justin Lemkul
      • [gmx-users] Unknown bond_atomtype   Nash, Anthony
• [gmx-users] tip4p2005 with gromacs 4.6.5   Irem Altan
  • [gmx-users] tip4p2005 with gromacs 4.6.5   Justin Lemkul
    • [gmx-users] tip4p2005 with gromacs 4.6.5   Irem Altan
      • [gmx-users] tip4p2005 with gromacs 4.6.5   Justin Lemkul
      • [gmx-users] tip4p2005 with gromacs 4.6.5   Irem Altan
• [gmx-users] Problem in Potential energy of protein after energy minimization   Subhashree Rout
• [gmx-users] Pro-lig under one molecule type   Sana Saeed
  • [gmx-users] Pro-lig under one molecule type   Nikhil Maroli
    • [gmx-users] Pro-lig under one molecule type   Subhashree Rout
      • [gmx-users] Pro-lig under one molecule type   Justin Lemkul
      • [gmx-users] Pro-lig under one molecule type   Subhashree Rout
  • [gmx-users] Pro-lig under one molecule type   Justin Lemkul
• [gmx-users] Potential energy of protein after energy minimization   Subhashree Rout
  • [gmx-users] Potential energy of protein after energy minimization   Mark Abraham
    • [gmx-users] Potential energy of protein after energy minimization   Subhashree Rout
• [gmx-users] Relative binding free energy   Stefania Evoli
• [gmx-users] Errata corrige: relative binding free energy calculation   Stefania Evoli
• [gmx-users] Triglycerides: Berger Lipids and Kukol Lipids   Kindlein, Moritz
• [gmx-users] Nitrate parameters CHARMM   Tyler Cropley
  • [gmx-users] Nitrate parameters CHARMM   Ullmann, Thomas
• [gmx-users] protein transport in nanotube   ANAND AMITKUMAR DHARIA
• [gmx-users] Segmentation fault while using external water model   Irem Altan
  • [gmx-users] Segmentation fault while using external water model   Mark Abraham
    • [gmx-users] Segmentation fault while using external water model   Irem Altan
• [gmx-users] how to set Restraints   Sana Saeed
  • [gmx-users] how to set Restraints   Justin Lemkul
• [gmx-users] Fragmented backbone   Biplab Ghosh
  • [gmx-users] Fragmented backbone   Tsjerk Wassenaar
• [gmx-users] Simulation of chromatographic column   Sivamoke Dissook
• [gmx-users] converted topology from amber to gromacs   mohammad r
  • [gmx-users] converted topology from amber to gromacs   Hai Nguyen
    • [gmx-users] converted topology from amber to gromacs   mohammad r
      • [gmx-users] converted topology from amber to gromacs   mohammad r
      • [gmx-users] converted topology from amber to gromacs   Justin Lemkul
• [gmx-users] Embedding Protein into lipid bilayer   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Embedding Protein into lipid bilayer   Catarina A. Carvalheda dos Santos
    • [gmx-users] Embedding Protein into lipid bilayer   Catarina A. Carvalheda dos Santos
      • [gmx-users] auto-neutralize system   Samuel Flores
      • [gmx-users] auto-neutralize system   João Henriques
      • [gmx-users] auto-neutralize system   Piggot T.
      • [gmx-users] auto-neutralize system   João Henriques
      • [gmx-users] auto-neutralize system   Justin Lemkul
      • [gmx-users] auto-neutralize system   Piggot T.
      • [gmx-users] auto-neutralize system   Piggot T.
      • [gmx-users] auto-neutralize system   Samuel Flores
      • [gmx-users] auto-neutralize system   Mark Abraham
• [gmx-users] (no subject)   yanbochen123 at gmail.com
• [gmx-users] pdb2gmx with GROMOS   Dries Van Rompaey
  • [gmx-users] pdb2gmx with GROMOS   Justin Lemkul
    • [gmx-users] pdb2gmx with GROMOS   Dries Van Rompaey
      • [gmx-users] pdb2gmx with GROMOS   Justin Lemkul
      • [gmx-users] pdb2gmx with GROMOS   Dries Van Rompaey
• [gmx-users] Regarding Lipid bilayer genration   Bikash Ranjan Sahoo
  • [gmx-users] Regarding Lipid bilayer genration   Nikhil Maroli
    • [gmx-users] Regarding Lipid bilayer genration   Bikash Ranjan Sahoo
      • [gmx-users] Regarding Lipid bilayer genration   Tsjerk Wassenaar
• [gmx-users] correct rlist and Verlet scheme   Timofey Tyugashev
• [gmx-users] correct rlist and Verlet scheme   Timofey Tyugashev
  • [gmx-users] correct rlist and Verlet scheme   Dries Van Rompaey
  • [gmx-users] correct rlist and Verlet scheme   Szilárd Páll
• [gmx-users] Strange behaviour of sorient.   Timofey Tyugashev
• [gmx-users] Temperature Calculation in MD   Ray Chao
  • [gmx-users] Temperature Calculation in MD   Justin Lemkul
• [gmx-users] Did not find any molecules of type ...   Marta Wisniewska
  • [gmx-users] Did not find any molecules of type ...   Justin Lemkul
• [gmx-users] Query regarding energy calculation   Tushar Ranjan Moharana
  • [gmx-users] Query regarding energy calculation   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 115   Timofey Tyugashev
• [gmx-users] REGRESSIONTESTS-5.1.tar.gz   ikrormi rungsung
  • [gmx-users] REGRESSIONTESTS-5.1.tar.gz   João M. Damas
• [gmx-users] (no subject)   khourshaeishargh at mech.sharif.ir
• [gmx-users] Embedding Protein into lipid bilayer   khourshaeishargh at mech.sharif.ir
• [gmx-users] A questin to Justin on methods in the PPARγ-RXRα-DNA complex paper   Timofey Tyugashev
  • [gmx-users] A questin to Justin on methods in the PPARγ-RXRα-DNA complex paper   Justin Lemkul
• [gmx-users] Embedding Protein into lipid bilayer   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Embedding Protein into lipid bilayer   Justin Lemkul
• [gmx-users] Embedding Protein into lipid bilayer   khourshaeishargh at mech.sharif.ir
• [gmx-users] A question to Justin about his helpful tutorial   khourshaeishargh at mech.sharif.ir
• [gmx-users] docking   Negar Parvizi
  • [gmx-users] docking   Justin Lemkul
• [gmx-users] cutoff-scheme=Verlet   Alexander Alexander
  • [gmx-users] cutoff-scheme=Verlet   Dries Van Rompaey
• [gmx-users] vacuum/gas md   Rasha Alqus
  • [gmx-users] vacuum/gas md   Justin Lemkul
• [gmx-users] converted topology from amber to gromacs   Justin Lemkul
  • [gmx-users] converted topology from amber to gromacs   mohammad r
• [gmx-users] how to set Restraints   Justin Lemkul
• [gmx-users] Regarding Lipid bilayer genration (Bikash Ranjan Sahoo)   Björn Sommer
• [gmx-users] Extend the simulation   Elsaid Younes
  • [gmx-users] Extend the simulation   Mark Abraham
• [gmx-users] Temperature Calculation in MD   Ray Chao
  • [gmx-users] Temperature Calculation in MD   Justin Lemkul
• [gmx-users] Extend the simulation   Elsaid
  • [gmx-users] Extend the simulation   Justin Lemkul
  • [gmx-users] Extend the simulation   Elsaid Younes
    • [gmx-users] Extend the simulation   Justin Lemkul
    • [gmx-users] Extend the simulation   Elsaid Younes
      • [gmx-users] Extend the simulation   Justin Lemkul
      • [gmx-users] Extend the simulation   Elsaid Younes
      • [gmx-users] Extend the simulation   Justin Lemkul
      • [gmx-users] Extend the simulation   Elsaid Younes
      • [gmx-users] Extend the simulation   Justin Lemkul
      • [gmx-users] Extend the simulation   Mark Abraham
      • [gmx-users] Extend the simulation   Elsaid Younes
      • [gmx-users] Extend the simulation   Elsaid Younes
      • [gmx-users] Extend the simulation   Elsaid Younes
• [gmx-users] Regarding Lipid bilayer genration (Bikash Ranjan Sahoo)   Björn Sommer
• [gmx-users] fix COM   Ming Tang
  • [gmx-users] fix COM   Justin Lemkul
    • [gmx-users] fix COM   Mark Abraham
• [gmx-users] position restraints for different protein atoms   Irem Altan
  • [gmx-users] position restraints for different protein atoms   Justin Lemkul
• [gmx-users] Embedding Protein into lipid bilayer   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Embedding Protein into lipid bilayer   Justin Lemkul
• [gmx-users] Screenshot from 2016-02-21 18:45:00.png   Nikhil M (via Google Drive)
• [gmx-users] umbrella simulation -pulling in other directions   Nikhil Maroli
  • [gmx-users] umbrella simulation -pulling in other directions   Justin Lemkul
• [gmx-users] Potential energy   mohammad r
  • [gmx-users] Potential energy   Justin Lemkul
    • [gmx-users] Potential energy   mohammad r
      • [gmx-users] Potential energy   Justin Lemkul
• [gmx-users] docking   Justin Lemkul
• [gmx-users] fix COM   Ming Tang
• [gmx-users] fix COM   Ming Tang
  • [gmx-users] fix COM   Mark Abraham
• [gmx-users] umbrella simulation PMF curve   Nikhil Maroli
  • [gmx-users] umbrella simulation PMF curve   Sarath Chandra
• [gmx-users] modeling CNT, center of mass velocity, energy minimization   mohammad r
  • [gmx-users] modeling CNT, center of mass velocity, energy minimization   mohammad r
• [gmx-users] Effect of compilers loaded at runtime   Dries Van Rompaey
  • [gmx-users] Effect of compilers loaded at runtime   Mark Abraham
• [gmx-users] Embedding Protein into lipid bilayer   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Embedding Protein into lipid bilayer   Justin Lemkul
• [gmx-users] Did not find any molecules of type ...   Marta Wisniewska
  • [gmx-users] Did not find any molecules of type ...   Mark Abraham
• [gmx-users] how to correct/remove error installation issue   Mehreen Jan
  • [gmx-users] how to correct/remove error installation issue   Erik Marklund
• [gmx-users] OpenCL compile error   Geert Konijnendijk
  • [gmx-users] OpenCL compile error   Mark Abraham
    • [gmx-users] OpenCL compile error   Szilárd Páll
      • [gmx-users] OpenCL compile error   Geert Konijnendijk
      • [gmx-users] OpenCL compile error   Szilárd Páll
• [gmx-users] Beginner's problem: g_rdf functions and -com   Henry -
  • [gmx-users] Beginner's problem: g_rdf functions and -com. Second attempt.   Henry -
• [gmx-users] fix COM   Ming Tang
  • [gmx-users] fix COM   Justin Lemkul
• [gmx-users] confusion on energy for a system of protein sovated in water   Ming Tang
  • [gmx-users] confusion on energy for a system of protein sovated in water   Justin Lemkul
• [gmx-users] confusion on energy for a system of protein sovated in water   Ming Tang
  • [gmx-users] confusion on energy for a system of protein sovated in water   Justin Lemkul
• [gmx-users] Huge conformational change of ATP molecules   Zheng Ruan
  • [gmx-users] Huge conformational change of ATP molecules   Mark Abraham
    • [gmx-users] Huge conformational change of ATP molecules   Zheng Ruan
      • [gmx-users] Huge conformational change of ATP molecules   Mark Abraham
• [gmx-users] Mdrun with rdd option   Raju Lunkad
  • [gmx-users] Mdrun with rdd option   Mark Abraham
• [gmx-users] Regarding installation problem   SOUVIK MONDAL
  • [gmx-users] Regarding installation problem   Mark Abraham
  • [gmx-users] Regarding installation problem   SOUVIK MONDAL
    • [gmx-users] Regarding installation problem   Mark Abraham
      • [gmx-users] Regarding installation problem   SOUVIK MONDAL
      • [gmx-users] Regarding installation problem   Mark Abraham
      • [gmx-users] Regarding installation problem   SOUVIK MONDAL
      • [gmx-users] Regarding installation problem   Mark Abraham
      • [gmx-users] Regarding installation problem   SOUVIK MONDAL
      • [gmx-users] Regarding installation problem   Mark Abraham
      • [gmx-users] Regarding installation problem   Szilárd Páll
      • [gmx-users] Regarding installation problem   Mark Abraham
• [gmx-users] generating an initial structure with a gromacs compatible tool   Nash, Anthony
  • [gmx-users] generating an initial structure with a gromacs compatible tool   Mark Abraham
    • [gmx-users] generating an initial structure with a gromacs compatible tool   Nash, Anthony
      • [gmx-users] generating an initial structure with a gromacs compatible tool   Mark Abraham
      • [gmx-users] generating an initial structure with a gromacs compatible tool   Nash, Anthony
      • [gmx-users] generating an initial structure with a gromacs compatible tool   Mark Abraham
      • [gmx-users] generating an initial structure with a gromacs compatible tool   Nash, Anthony
• [gmx-users] Post-doctoral position in Computational Physics   Andrea Spitaleri
• [gmx-users] gmx sasa versus g_sas   Sara Del Galdo
  • [gmx-users] gmx sasa versus g_sas   Justin Lemkul
• [gmx-users] Segmentation fault during equilibration   Yasser Almeida
  • [gmx-users] Segmentation fault during equilibration   Mark Abraham
• [gmx-users] Protein-ligand system simulations with GROMACS   Guillem Prats Ejarque
  • [gmx-users] Protein-ligand system simulations with GROMACS   Dries Van Rompaey
• [gmx-users] protein atoms with alternate conformations   Irem Altan
  • [gmx-users] protein atoms with alternate conformations   Mark Abraham
    • [gmx-users] protein atoms with alternate conformations   Irem Altan
• [gmx-users] Question about WHAM   Supriyo Bhattacharya
• [gmx-users] State B IN Topology   Sana Saeed
  • [gmx-users] State B IN Topology   Justin Lemkul
• [gmx-users] pdb2gmx generate .itp file for each molecule   Ray Chao
  • [gmx-users] pdb2gmx generate .itp file for each molecule   Justin Lemkul
• [gmx-users] pdb2gmx generate .itp file for each molecule   Ming Tang
• [gmx-users] recompile gromacs 5.0.7   Mehreen Jan
• [gmx-users] Sulfate ion parameters   #SUKRITI GUPTA#
  • [gmx-users] Sulfate ion parameters   Christian Bope Domilongo
    • [gmx-users] Sulfate ion parameters   #SUKRITI GUPTA#
      • [gmx-users] Sulfate ion parameters   Mark Abraham
• [gmx-users] recompile gromacs   Erik Marklund
• [gmx-users] structure expanding beyond eq values   Nash, Anthony
  • [gmx-users] structure expanding beyond eq values   Justin Lemkul
• [gmx-users] Reproducing Charmm36 POPC electron density   Gmx QA
  • [gmx-users] Reproducing Charmm36 POPC electron density   Justin Lemkul
    • [gmx-users] Reproducing Charmm36 POPC electron density   Gmx QA
      • [gmx-users] Reproducing Charmm36 POPC electron density   Justin Lemkul
• [gmx-users] Protein-ligand system simulations with GROMACS   Guillem Prats Ejarque
  • [gmx-users] Protein-ligand system simulations with GROMACS   Dries Van Rompaey
• [gmx-users] TIP4P water model   abdus sabuj
• [gmx-users] Table Potential for molecules with partial charge on atoms   Alireza Moradzadeh
• [gmx-users] Protein-Ligand complex MD   Adamu, Aliyu
  • [gmx-users] Protein-Ligand complex MD   Nikhil Maroli
  • [gmx-users] Protein-Ligand complex MD   Justin Lemkul
    • [gmx-users] Protein-Ligand complex MD   Adamu, Aliyu
• [gmx-users] convert a trajectory file to a dat file   Omme.Salameh Azin
  • [gmx-users] convert a trajectory file to a dat file   Justin Lemkul
• [gmx-users] Using longer cut-off for AMBER99SB   Agnivo Gosai
  • [gmx-users] Using longer cut-off for AMBER99SB   Justin Lemkul
• [gmx-users] Coarse Grain using martinize.py   khourshaeishargh at mech.sharif.ir
• [gmx-users] Coarse Grain using martinize.py   Tsjerk Wassenaar
  • [gmx-users] Coarse Grain using martinize.py   jagannath mondal
  • [gmx-users] Coarse Grain using martinize.py   Jagannath Mondal
• [gmx-users] Averages are not printed in log files after changing the .mdp files during HREMD restart   Shyno Mathew
• [gmx-users] How can I calculate mutational free energy difference of wt and mutant protein?   Mijiddorj Batsaikhan
• [gmx-users] (no subject)   Kowsar Khajeh
• [gmx-users] protein-DNA complex   Mahboobeh Eslami
  • [gmx-users] protein-DNA complex   Justin Lemkul
• [gmx-users] renumber ligand atom numbers   Sana Saeed
  • [gmx-users] renumber ligand atom numbers   Justin Lemkul
• [gmx-users] renumber ligand atom numbers   Justin Lemkul
• [gmx-users] renumber ligand atom numbers   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 155   Sana Saeed
• [gmx-users] folding free energy difference of wt and mutant protein?   Mijiddorj Batsaikhan
  • [gmx-users] folding free energy difference of wt and mutant protein?   David van der Spoel
• [gmx-users] Atom X in residue YYY was not found in rtp fil   Dawid das
  • [gmx-users] Atom X in residue YYY was not found in rtp fil   Justin Lemkul
    • [gmx-users] Atom X in residue YYY was not found in rtp fil   Dawid das
      • [gmx-users] Atom X in residue YYY was not found in rtp fil   Kowsar Khajeh
      • [gmx-users] Atom X in residue YYY was not found in rtp fil   André Farias de Moura
• [gmx-users] GROMOS Topology files for DSPC   John Smith
  • [gmx-users] GROMOS Topology files for DSPC   Thomas Piggot
• [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
  • [gmx-users] Minimising forces for vibrational normal mode analysis   Tsjerk Wassenaar
    • [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Tsjerk Wassenaar
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Justin Lemkul
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Mark Abraham
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
      • [gmx-users] Minimising forces for vibrational normal mode analysis   Nash, Anthony
• [gmx-users] complex topology nr error   Sana Saeed
  • [gmx-users] complex topology nr error   Justin Lemkul
• [gmx-users] Separate permeating water molecule from solvent water   Michail Palaiokostas Avramidis
  • [gmx-users] Separate permeating water molecule from solvent water   Justin Lemkul
• [gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4   Dries Van Rompaey
• [gmx-users] Acpype topolgy error   Abid Channa
  • [gmx-users] Acpype topolgy error   Justin Lemkul
    • [gmx-users] Acpype topolgy error   Mutemi Chief
      • [gmx-users] Acpype topolgy error   Justin Lemkul
• [gmx-users] magnetic field   Kowsar Khajeh
  • [gmx-users] magnetic field   Mark Abraham
  • [gmx-users] magnetic field   Kowsar Khajeh
• [gmx-users] generating martini-version of lipids   Jagannath Mondal
  • [gmx-users] generating martini-version of lipids   Tsjerk Wassenaar
• [gmx-users] Fw: protein-DNA complex   Mahboobeh Eslami
• [gmx-users] protein-DNA complex   Justin Lemkul
• [gmx-users] [gmx-developers] how to deal with improper dihedral angles   Justin Lemkul
• [gmx-users] Note of geometric combination rules in LJ-PME   badamkhatan togoldor
  • [gmx-users] Note of geometric combination rules in LJ-PME   badamkhatan togoldor
• [gmx-users] Box size for decoupled molecule in NpT ensemble   Andreas Mecklenfeld
• [gmx-users] Calculate energy associated with hydrogen bond   Tushar Ranjan Moharana
  • [gmx-users] Calculate energy associated with hydrogen bond   Erik Marklund
• [gmx-users] nrexcl   Parvez Mh
  • [gmx-users] nrexcl   Mark Abraham
• [gmx-users] Coarse grain membrane simulation of DPPC   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Coarse grain membrane simulation of DPPC   Tsjerk Wassenaar
• [gmx-users] No bonds in *.top file   Dawid das

Last message date: Mon Feb 29 22:53:20 CET 2016
Archived on: Mon Feb 29 22:53:21 CET 2016

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...